1 5' 3' | 2 5' 3' | 3 5' 3' |
CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaattttatttgcttgatttaggtcacaaacaaacatgtggcttgatattatttgctgtatattttgacag
species | Glycine max |
transcript | GLYMA17G18430.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGTEST: gi|31472066|gb|CD414094.1|CD414094
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTT-CTTTTGAGGTEST: gi|10252640|gb|BE820406.1|BE820406
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGTEST: gi|7028796|gb|AW458579.1|AW458579
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGTEST: gi|209714170|gb|BW679499.1|BW679499
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTT-CTTTTGAGGT
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTATGATGTAAAGAGAGCACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaattttatttgcttgatttaggtcacaaacaaacatgtggcttgatattatttgctgtatattttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA