Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGgtgtgtttcaaaacttttatcttctagatatgagatgtaatgcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcgacag

Basic information

species Glycine max
transcript GLYMA17G17990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17990.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g40260.2 (Oryza sativa), 5'ss of exon 3
TATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGgtgtgtttcaaaacttttatcttctagatatgagatgtaatgcatttt----------cttaacaaatgcattttatta--------atctcacacatttact--ctagtttcggggtggcgacag
| |||||||||||||||||||||||||| ||| | ||||| || ||||| ||  || | ||  | ||||||| |||  |  ||||| | ||||| || |||| |  | ||    |||| | || |  | |  |||   ||     |||          ||  |  || |  || || |         || | | |||||| ||   || ||| ||  || | ||||
TGTGCTATGGTGGAATGGATGTTGGTGGTGGTACTATGGTACTTGGTGGGATGCCTGCTCCTCCTGACATGGTTTTCTCTCATTCAAACCCTGTCCGCAGgtattataca---tttttgttttttccacaccagactgaagattcttttagtagcctgctggaggaaggttttctaatgttctgtatatttaatacatttccttattaattttggattgtcaacag

upper sequence: GLYMA17G17990.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 3
TATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGgtgtgtttcaaaac------ttttatcttctagatatgagatgtaatgcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcgacag
| || ||||| || |||||||||||||| ||| | ||| |||| || ||  |   |   ||||| || ||||  ||| |  | || || |||| |||||||| |||||| ||         ||| |||  | | |    |   |  || ||  || |||||||| | ||| ||   | |||||||||||||||||||||||| |||||||||
TGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGgtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacag

upper sequence: GLYMA17G17990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 5'ss of exon 3
TATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGgtgtgtttcaaaac-ttttatcttctagatatgagatgtaatgcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcgacag
|||| |||||||||||||||||||||||||| |||||||| || ||||| || || || ||  ||| ||||| |||| |  ||||||| || |  || |||| || ||  |||  ||||||||| ||||||| | |    |     || | |||   ||  |||| ||  || |  ||||||||||||||| ||||| |||  ||||
TATGTTATGGTGGAATGGATGTTGGTGGGGGCGCAATGGTCCTTGGTGGAATTTCCCCTCCTGCAGGCATGGTTTTTACGCATTCAGACCCAGCACGAAGgtttggtttgaaatattttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacag