1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttctattctctattgtttaataatgaagtacatgaacttggcacaactgatattgtttttgcttttactatttttttaatcctcacatcgtgttg...
species | Glycine max |
transcript | GLYMA17G17520.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTACATTGTCAGACTACGAAATACGATATTATATTTATGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|15203622|gb|BI426390.1|BI426390
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGAAATACGATATTATATTTATGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|9564123|gb|BE473632.1|BE473632
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGAAATACGATATTATATTTATGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|21887281|gb|BQ740494.1|BQ740494
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGAAATACGATATTATATTTATGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|17963627|gb|BM270374.1|BM270374
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGAAATACGATATTATATTTATGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|13478623|gb|BG508028.1|BG508028
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAG GCGCTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|18038926|gb|BM307220.1|BM307220
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|14260055|gb|BG882963.1|BG882963
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGAAATACGATATTATATTTATGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|9565463|gb|BE474972.1|BE474972
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGAAATACGATATTATATTTATGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCAEST: gi|254330876|gb|GR842141.1|GR842141
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
EST: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAG GCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
genomic: CTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttcta ... tttctgccagGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGTGATGTGAAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCTACATTGTCAGACTACGACATACGATATTATATTTTTGAACTTCTGAAGgcaagttctattctctattgtttaataatgaagtacatgaacttggcacaactgatattgtttttgcttttactatttttttaatcctcacatcgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG