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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTgtaagttaaagttcaaatccttagcccatgatttattggaaatactttactgtaatctaagttgttgatacattaggttggtttggtatcttgtttcag

Basic information

species Glycine max
transcript GLYMA17G15900.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15900.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G47100.1 (Arabidopsis thaliana), 5'ss of exon 5
TTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTgtaagttaaagttcaaatccttagcccatgatttattggaaatactttactgtaatctaagttgttgatacattaggttggtttggtatct--tgtttcag
||||||||||| ||       || ||  |||| || | ||||||||| ||||| |||||||||||||| || ||||||||  || | || || | ||  |||||||| |     |||     ||   || ||  || |    | || ||    || |   | |||   |  |||    |  ||  |||| |  | | ||||
TTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGTGAGATCACTCAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTgtaagttgacccataaa---cgagtttat-atccatcgtcgtttctcta----aagccttgctgtacttttattcatgttattctgtatttcatatatcag

upper sequence: GLYMA17G15900.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G17615.2 (Arabidopsis thaliana), 5'ss of exon 4
TTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTgtaagttaaagttcaaatccttagcccatgatttattggaaatactttactgtaatctaagttgttgatacattaggttggtttggtatcttgtttcag
 | |||||||| ||       |||||| | || ||||  |||||||| ||||| ||||||||||||||||| ||||||||  || ||||||| |||| ||||||||| |  |   |    ||     ||   |  ||    |  ||||  ||| |    | || ||||| |       |||| ||  || || | ||||
ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataagatagtttcatatataggtgtttattgaagcttt--tgtgaagagatttattgattc-------tggtctgccattttttctcag