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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAGCTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtcagatacaaactttttttgttcctctctgactttttaatggccatatgaatgcatcacatgatgaccatcaccaagcccatttagccctttatttaaataatatattggtccatatttatgcag

Basic information

species Glycine max
transcript GLYMA17G13410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13410.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g19304.2 (Oryza sativa), 5'ss of exon 3
CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAGCTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtcagatacaaactttttttgttcctctctgactttttaatggccatatgaatgcatcacatgatgaccatcaccaagcccatttagcc-ctttatttaaataatatattggtccatatttatgcag
 || || || || |||   || || ||||| ||  |||||||||| ||||| ||||||||||| || ||||| ||||| |||||    |||||  ||||||| |||    | |     |  |     |       |    | |||||   | |||    |    |   | |  ||     |   |||| |  |  |||||||   | |  | ||   |  || |  | |||
TATTTATATCAATACTTCTTTGGAAACAAAAGCTCATGCTCATGAACTTGTACCTACAATAACATGCACTTCTTCAAACGTTGTAGCAACTATATTACAGgtaggtgtttttcttgtctactacaaactctagccaaccatgaatggttttttgag---aatggacattaattattgttcactacattaactcattttattttgtttac-tcttatccgttaatctttcag

upper sequence: GLYMA17G13410.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50210.1 (Arabidopsis thaliana), 5'ss of exon 3
CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAGCTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtcagatacaaactttttttgttcctctctgactttttaatggccatatgaatgcatcacatgatgaccatcaccaagcccatttagccctttatttaaataatatattggtccatatttatgcag
  | || || || ||    || |||||||| || | ||||||||||||||| ||||| || || || |||||||| |||||||| ||||| || || |||||| ||    | |   |||| ||   || ||| |   |||||              |      |||  ||  | |    ||  | ||||   | | | | |    ||||                     
TGTTTATATAAATACATCTTTGGAGACAAAAGCTTTTGCTCATGAGCTTGTACCTACCATTACTTGCACTTCATCTAATGTTGTACAGACGATTCTGCAGgtttgt----ttcttgctttcttcaatcttcttttctttttt--------------ttttcttcatcttg--cttttttaaagctatttc-tcttctctcttgtcaatag--------------------

upper sequence: GLYMA17G13410.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09490.t01 (Vitis vinifera), 5'ss of exon 3
CATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCATGAGCTTGTGCCTACAATAACCTGTACTTCATCAAATGTTGTCCAGACTATCCTACAGgttggtcagat-acaaactttttttgtt----cctctctgactttttaatggccatatgaatgcatcacatgatgaccatcaccaagcccatttagccctttatttaaataatatattggtccatattt---atgcag-----------------------------
  | || || ||||||  |||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| || || || || |||||||||   || || |  || |||  ||     ||     |   ||||  |    | |    |  |   || |||    |     ||||       ||  | |    | |  | | |    ||  || |   |||||                              
TGTTTATATAAACACTTCGTTAGAGACAAAAGCATATGCTCATGAACTTGTGCCAACAATTACCTGTACTTCTTCTAATGTTGTGCAAACCATTCTGCAGgttggtattatcaccagtttctttaattataatcttctgcatcatttagggcttgtctatgagttttgtattatgtggtttcttgagcc------acctctcaagggagtggtttttcttcccccatcttaaatgcaagccccatgctttctttttccttcttgcag