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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGATGATACTCCATGGGATGGAGgtgagtttgtctttttaccatggctcctatcttggaaacaattttgatacatgtcaactcagttattcagttttttagccatcttgagcgttgcgtgcag...

Basic information

species Glycine max
transcript GLYMA17G10640.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335070|gb|GR844855.1|GR844855
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|16106211|gb|BI893951.1|BI893951
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|254335069|gb|GR844854.1|GR844854
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|192331367|gb|FK021035.1|FK021035
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGCTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|21888252|gb|BQ741465.1|BQ741465
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|192330437|gb|FK021196.1|FK021196
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGCTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|254331190|gb|GR843309.1|GR843309
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|192330438|gb|FK021197.1|FK021197
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGCTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|48575423|gb|CO036396.1|CO036396
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|16996966|gb|BM086338.1|BM086338
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|208058951|gb|GD858983.1|GD858983
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|192331366|gb|FK021034.1|FK021034
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGCTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|14259666|gb|BG882574.1|BG882574
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
EST: gi|254317221|gb|GR826166.1|GR826166
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtttgt ... agttatccagGCACGTTTAAGTTGATTCTTCAATTTACTGAGGATTATCCAAACAAGCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTGATGATACTCCATGGGATGGAGgtgagtttgtctttttaccatggctcctatcttggaaacaattttgatacatgtcaactcagttattcagttttttagccatcttgagcgttgcgtgcag

- - - - - - - - -  GATGGA