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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagtagtgtatttgatttttgtttttatccttttaagggcgttagtgatattaggatagtgagtatttctttttctgttttggctagggttgata...

Basic information

species Glycine max
transcript GLYMA17G10170.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G10170.3 (Glycine max), 5'ss of exon 3
lower sequence: AT1G74890.1 (Arabidopsis thaliana), 5'ss of exon 3
AGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtag-tagtgtatttgatttttgtttttatccttttaa-gggcgttagtgatattaggatagtgagtatttctttttctgttttggctagggttgata
  | | || || ||  | ||| ||||||||||||| ||||||||  | |||||||||||| | |||||||| ||||| ||   |   || | | | | |||| |      |   ||| ||   ||  |  |  | ||    |    |  |||   || | | |||  || ||        
GATTTGAAAGTGAACTTGATAGTGACGGATTATTCAATGCCGGGACTAACAGGATATGAACTCCTCAAGAAGATCAAAgtaaatttctattttgtgtcatttattagagcaagatttgaataagctcttctcgtgttttccttacaaaaattctgttgtatattt--gccag--------

upper sequence: GLYMA17G10170.3 (Glycine max), 5'ss of exon 3
lower sequence: AT3G48100.1 (Arabidopsis thaliana), 5'ss of exon 3
AGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagtagtg-tatttgatttttgtttttatccttttaagggcgtt-------------agtgatattaggatagtgagtatttctttttctgttttggctagggttgata-------------
  | | ||| ||||| | |||||||||||||| || ||||| |||||||| ||||||||| |||| ||||| ||||| ||  ||  |  || |  || | || | ||   |   ||  || |  |||             |   |  |||  | |    | | || |  |    | |||  || || |  |              
GATCTGAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGACTGGATATGAACTACTGAAGAAGATCAAAgtaagttttgttgatgattcaattgttttcacaaaattaaaatgaagttctgatttgacgaaaaaaaatttaaaaaaaaatgaagttttgatctaatcttgtttatggattttgaactttttaacag

upper sequence: GLYMA17G10170.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g07580.t01 (Vitis vinifera), 5'ss of exon 3
AGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtg----tagtagtgtatttgatttttgtttttatccttttaagggcgttagtgatatt-aggatagtgagtatttctttttctgttttggctagggttgata
 || | ||||| ||||| || |||||||| ||||| ||||| ||||||||||| ||||| || |||||||| |||||||| ||    | |  || |  |  |||     || |     |    ||  | | |  | |   | || ||  | ||     |  |   |      || |||     
GGTTTGAAGGTGAATCTGATCATGACGGACTATTCTATGCCTGGGATGACAGGGTATGAGTTGCTCAAGAAGATCAAGgtttgatatttgccgtttgataaattgcctcttgtgggtctgcttggttgctgggaaaacccatgaaaggaaatacaatctggttcctccattttatggt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193643060|gb|FK588186.1|FK588186
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193684960|gb|FK626918.1|FK626918
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|207830233|gb|GD804641.1|GD804641
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|208247774|gb|GE045302.1|GE045302
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193379096|gb|FK344430.1|FK344430
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193515984|gb|FK475982.1|FK475982
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|213620080|gb|DB967451.1|DB967451
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|213620080|gb|DB967451.1|DB967451
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|213620080|gb|DB967451.1|DB967451
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|213620080|gb|DB967451.1|DB967451
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193596881|gb|FK549127.1|FK549127
EST:     GCCGGGAATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|208295767|gb|GE093080.1|GE093080
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|209713249|gb|BW681788.1|BW681788
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|209713249|gb|BW681788.1|BW681788
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|209713249|gb|BW681788.1|BW681788
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|209713249|gb|BW681788.1|BW681788
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192309041|gb|FK001817.1|FK001817
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192309041|gb|FK001817.1|FK001817
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192309041|gb|FK001817.1|FK001817
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192309041|gb|FK001817.1|FK001817
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|208278257|gb|GE074396.1|GE074396
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|208276360|gb|GE074710.1|GE074710
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|208194928|gb|GD988911.1|GD988911
EST:     TCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: TCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193549799|gb|FK507494.1|FK507494
EST:     GATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193730031|gb|FK667847.1|FK667847
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193730031|gb|FK667847.1|FK667847
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193730031|gb|FK667847.1|FK667847
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193730031|gb|FK667847.1|FK667847
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192294700|gb|FG986549.1|FG986549
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192294700|gb|FG986549.1|FG986549
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192294700|gb|FG986549.1|FG986549
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192294700|gb|FG986549.1|FG986549
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193478518|gb|FK447111.1|FK447111
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|18732668|gb|BM527175.1|BM527175
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|18732668|gb|BM527175.1|BM527175
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|18732668|gb|BM527175.1|BM527175
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|18732668|gb|BM527175.1|BM527175
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193590792|gb|FK545897.1|FK545897
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193590792|gb|FK545897.1|FK545897
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193590792|gb|FK545897.1|FK545897
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|193590792|gb|FK545897.1|FK545897
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         G
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|254344992|gb|GR855649.1|GR855649
EST:     CAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: CAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193355946|gb|FK322617.1|FK322617
EST:     GCCGGGGATGACTAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGAC-AGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193720571|gb|FK659407.1|FK659407
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193723973|gb|FK656337.1|FK656337
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|209713250|gb|BW681789.1|BW681789
EST:     TCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: TCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|192312819|gb|FK005431.1|FK005431
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         C
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192312819|gb|FK005431.1|FK005431
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         C
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192312819|gb|FK005431.1|FK005431
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         C
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192312819|gb|FK005431.1|FK005431
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         C
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192312819|gb|FK005431.1|FK005431
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         C
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192312819|gb|FK005431.1|FK005431
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         C
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|192312819|gb|FK005431.1|FK005431
EST:     ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAG                         C
genomic: ATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagta ... tcagcaggag-
EST: gi|208113423|gb|GD913358.1|GD913358
EST:     TGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: TGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193476819|gb|FK440380.1|FK440380
EST:     ATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: ATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193582824|gb|FK537450.1|FK537450
EST:     CGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: CGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg
EST: gi|193352247|gb|FK317651.1|FK317651
EST:     GCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAG                       
genomic: GCCGGGGATGACAGGATATGAATTACTCAAGAAAATC-A--AGgtgtgtagta ... tcagcagg

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGTTAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGgtgtgtagtagtgtatttgatttttgtttttatccttttaagggcgttagtgatattaggatagtgagtatttctttttctgttttggctagggttgata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA