1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTTCAGGCTTGGGGCAAGAGTTGTGGACAACTTTGATGGTGTTAGAATAAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATgtgagtatttatatataaatatataacctttatctgcttaaatgtatcaagatcgaatgtttccacatgctatcaaaatttactttgagactaatttgaa...
species | Glycine max |
transcript | GLYMA17G10040.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAAT TGTACAAGAAGCACCATCCTCCTAGTCTGTCTGATGAAGTTTGGAGATTGGEST: gi|192311694|gb|FK004885.1|FK004885
genomic: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATgtgagtattt ... ttggctgcagTGTACAAGAAGCACCATCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGG
EST: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAAT TGTACAAGAAGCACCACCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGGEST: gi|192311693|gb|FK004884.1|FK004884
genomic: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATgtgagtattt ... ttggctgcagTGTACAAGAAGCACCATCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGG
EST: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAAT TGTACAAGAAGCACCACCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGGEST: gi|27426720|gb|CA938240.1|CA938240
genomic: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATgtgagtattt ... ttggctgcagTGTACAAGAAGCACCATCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGG
EST: GGGATCACAGAGGAGAAT TGTACAAGAAGCACCATCCTCCTAGTCTGTCTGATGAAGTTTGGAGATTGGEST: gi|7326640|gb|AW620438.1|AW620438
genomic: GGGATCACAGAGGAGAATgtgagtattt ... ttggctgcagTGTACAAGAAGCACCATCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGG
EST: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAAT TGTACAAGAAGCACCATCCTCCTAGTCTGTCTGATGAAGTTTGGAGATTGG
genomic: AAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATgtgagtattt ... ttggctgcagTGTACAAGAAGCACCATCCTCCTGGTCTGTCTGATGAAGTTTGGAGATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTCAGGCTTGGGGCAAGAGTTGTGGACAACTTTGATGGTGTTAGAATAAGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACAGAGGAGAATgtgagtatttatatataaatatataacctttatctgcttaaatgtatcaagatcgaatgtttccacatgctatcaaaatttactttgagactaatttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA