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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGgtatgtattggattcccttgctaatctgtcagatgctatgtttaccttttattatggtatgatgggtgtgtttgctgctttttcag

Basic information

species Glycine max
transcript GLYMA17G09270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGgtatgtattggattcccttgc--taatctgtcagatgctatgtttacctttt--attatggtatgatgggtgtgtttgctgcttttt-cag
|||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||| || ||| | || || || || ||||| | ||||||||||||||| |||  |||||  |   |  ||   || ||||    | |||   || |  |||      |   | | ||  |  |  |||  |  |  |  ||
AAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAGACATTGGCTTACTTGTTACCAGCATTGGTTCACGTTAGTGCACAACCTCGATTAGgtgagtattacagcactatgtgatattctgatttaagctgcattcatttttccggcaacttttttatttgcattgttggggtgtaatatag

upper sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 3
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGgtatgtattggattcccttgctaatctgtcagatgctatgtttaccttttattatggtatgatgggtgtgtttgctgctttttcag----------
|||||||||||||||||||||||||||||||||||||| || || || ||||| ||||||||||| ||||| || || || | |||||| |||| ||| |||  ||||||| |  ||||  |    | |  | |||    ||     | |  | |  | |  |   |   |||   | | ||| |           
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattggttagcctt-tttccttataggttgcccccttagttgtctgatctttttttctttattcttttttcgttcttttataattattcag