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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgttgtgtacctttttaattttctcatttttagaatatgcatgagttcattttgtagctgtgccatctaggtttaatctcacaaattagggaaacctggaa...

Basic information

species Glycine max
transcript GLYMA17G09080.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G09080.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgt-tgtgtaccttt------ttaattttctcatttttagaatatgcatg-agttcattttgtagctgtgccatctaggtttaatctcacaaattagggaaacctggaa---------------------------------------
| ||||||||  | || || |||||||| ||||| |  |  || || |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||| | | ||   ||      |  |||| ||  | |||  ||  ||     ||      || ||  ||         |    |  ||    | ||    | | ||  |                                        
ACTATGATACACTTCTTGACAATATACATGGTCTAAGGGATGGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGgtatatatattcttcgttggtgcatttactactatttcaaacttgtggacagacggcgttatacttgaattcctgggaacca--cttgttagttgataagagctacacagctgcaatgacttatcagtttcttcgtgctttgtatag

upper sequence: GLYMA17G09080.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 2
ATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgttgtgtacct--ttttaattttctcatttttagaatatgcatgagttcattttgtagctgtgccatctaggtttaatctcacaaattagggaaacctggaa
||||||  || ||||| || ||||| || ||| | |||||||||||||| ||||||||||| || |||||||| || ||||| |||||||||||||||||||||  || |   ||||  |||| |||    |    |||   |   ||| |  | |  || |     ||  || |    |  | | |||  |  || ||   
ATTATGGCACATTGCTTGAGAATATCCATGGTTTAAAAGCAGGGAAGCCCGTTCAAGTTCCTATTTACGATTTTAAATCTAGCTCTCGCATAGGTTACAGgttggttatccacttttttttttttcagaactcatttatattttgtttcctccttttccttttttg-ctctgtatttcttgcccagttactgttacttgag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274567|gb|BF324909.1|BF324909
EST:     GTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAG                         GACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGC
genomic: GTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgttgtgtacc ... ttgcttacagGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGC