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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCAGCAGGGATTTCTTGCCCATCAAGAATTTAGAACAAGCAATTAAAGAACACCAGAGATATATAAATGAACAAAAGAGTATCATGCAATCTCTGAGgttagttctctttcattttcaactattttttatgtgctctttattattaacgaagagtctaatgttaatgtatatcctgattttgtgctggaatcctttt...

Basic information

species Glycine max
transcript GLYMA17G07920.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07920.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0037g00730.t01 (Vitis vinifera), 5'ss of exon 2
TGTCCAGCAGGGATTTCTTGCCCATCAAGAATTTAGAACAAGCAATTAAAGAACACCAGAGATATATAAATGAACAAAAGAGTATCATGCAATCTCTGAGgttagttctctttcattttca---actattttttatgtgctctttattattaacgaagagtctaatgttaatgtatatcctgattttgtgctggaatcctttt
| |||||||    ||  ||||  | ||  |||||||||      || || || |||||| |||| ||||||||||| |||||||| ||||| ||||||||||||| |    || |||||     |||||| ||  |     |||| |  || |       |        || || | | |||   |  |   | | |||||| 
TTTCCAGCAAAACTTCGTTGCATACCACCAATTTAGAATTGATGATCAAGGAGCACCAGCGATACATAAATGAACAGAAGAGTATAATGCAGTCTCTGAGgttaggttctgttgattttattatactattattattccttgctttttcgtttaattgatatgattccccaaagtttcttctgcactcata--gcattccttt-