Sequence
atgc intronic sequence ATGC exonic sequenceCGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAGgttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcag
Basic information
species | Glycine max |
transcript | GLYMA17G07800.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07800.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G30510.1 (Arabidopsis thaliana), 5'ss of exon 3
CGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAGgttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcag
| | |||||| |||||||||| ||||||| ||| |||||| ||| ||||| || |||||||||||||| |||||| || || | | || | || | | || ||| | | | | | | | || | ||
CTGCTGGAGCCTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCAATTGTTGGAGCTGGTGAACAGgttt-gtgct-tgataaacattattcgataatcagatttgatctttgtttgat--taaggaaaatttcatatatatag--
upper sequence: GLYMA17G07800.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0037g00970.t01 (Vitis vinifera), 5'ss of exon 3
CGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAGgttcc--gtactatactg--tacttgggct---cgggctcgggctctgactgtgtattgttttgactgata-catgatgcacatgcag------------------------------------
| |||||| ||| | |||| |||||||||||||||||| ||||||||||| || |||||||||||||| ||||| | || | ||||| | ||| ||| || | | || | | | | ||| || || | | | | | |
CTATTGGAGGTTTCATCATTGTTGAGATGCTGTTTAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAGCAGgtgcttggtggtctactgatttgttgtgctagatggtgtagcccttttattaaaagtacattttcctactaacttctcttagtttctgattgatcatttaccatggttccatctgactccacag
upper sequence: GLYMA17G07800.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0091g00190.t01 (Vitis vinifera), 5'ss of exon 1
-----CGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAGgttcc--gtactatactg--tacttgggct---cgggctcgggctctgactgtgtattgttttgactgata-catgatgcacatgcag------------------------------------
| |||||| ||| | |||| |||||||||||||||||| ||||||||||| || |||||||||||||| ||||| | || | ||||| | ||| ||| || | | || | | | | ||| || || | | | | | |
GCTAGCTATTGGAGGTTTCATCATTGTTGAGATGCTGTTTAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAGCAGgtgcttggtggtctactgatttgttgtgctagatggtgtagcccttttattaaaagtacattttcctactaacttctcttagtttctgattgatcatttaccatggttccatctgactccacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192295874|gb|FG990898.1|FG990898EST: AGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAG CCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
genomic: AGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAGgttccgtact ... gcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAGTCTTCTTGCTATCGTTGGAGCTGGTGATCAGgttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcag
- - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT