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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGGGTTTAATGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacctttgtcaccatgattcagcaagttctgtataattttgtacttgttgtgcatatgttttcactgcctatgctgaactaaacagatctagaac...

Basic information

species Glycine max
transcript GLYMA17G07390.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07390.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S78_17V6.1 (Physcomitrella patens), 5'ss of exon 3
CAATTGGGTTTAATGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacctttgtcaccatgattcagcaagttctgt--ataattttgtacttgttgtgcatatgttttcactgcctatgctgaactaaacagatctagaac
| ||||| |||||||| || || ||||| || ||||| |||||||||||||| |||||| |||||      |     |||     ||    |  || | |  ||||||| ||| ||   ||   |   | |    ||   |||     ||     |    || ||
CTATTGGCTTTAATGTGGAGACTGTGCAATACAACAATATTAAATTTCAAGTTTGGGATCTAGgttcgtgtcgcgagcacaggatttttttattttttatttataatttggtaatttaagttttttattctctcatgtgaatgtcacccttg--tgtgtcaggac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813660|gb|BI785935.1|BI785935
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAGGCCATAT
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacct ... gtttatacagGTGGGCAAACAAGTATCAGGCCATAT
EST: gi|298186094|gb|HO036727.1|HO036727
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacct ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|120532471|gb|EH260604.1|EH260604
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacct ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|208147226|gb|GD944921.1|GD944921
EST:     ATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: ATTTCAAGTCTGGGATTTAGgtaacgacct ... gtttatacagGTGGGCAAACAAGTATCAG
EST: gi|193708401|gb|FK645423.1|FK645423
EST:     TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAG                         GTGGGCAAACAAGTATCAG
genomic: TGTCGAAACAGTGCAGTATAACAACATTAAATTTCAAGTCTGGGATTTAGgtaacgacct ... gtttatacagGTGGGCAAACAAGTATCAG