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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattgaactgatcccgttccgtctttcatgtgcattgttttttgcgccaatgtatgtagtatgcacattatgtgaatgatgctgttttgaaaaatgtggtag

Basic information

species Glycine max
transcript GLYMA17G07040.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 2
CGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattgaactgatcccgttccgtctttcatgtgcattgttttttgcgccaatgtatgtagtatgcacattatgtgaatgatgctgttttgaaaaatgtggtag-----
||| || ||||  ||  | ||||| ||||| | ||| ||||||||  |||||||||| || || |||||||| ||||||||||||||||| |  ||||||||  |         | |||  |||   ||    | |        |  ||  | | | |  | | | ||    | || |   |  ||| ||   || |  |||||  |     
CGCGGACGCGGGGAACCTCGAGCACTGCGCCAGGTACCTCAACCAGACGCTCGTCACCTTCGGCTTCCCGGCCTCGCTCGATCTCTTCGCCACCGACCCCgtagg---------gttccttttcttcctcctctctctcccccctcctgatctactttgcggattttggttctgatttccctagtgccgt---gagatttgtggggggttta

upper sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 3
CGCCGATGCGGACAATTTGGAGCATTGCGCTAAGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattgaactgatcccgttccgtctttcatgtgcattgttttttgcgccaatgtatgtagtatgcacattatgtgaatgatgctgttttgaaaaatgtggtag
||| |||||||  || ||||||||||| || |||||| | |||||  ||||||| ||||| || |||||||| ||||||||||| |||||    || || ||| | | ||                  ||   |||| |||||||| || |    ||   || |  |    ||| |     |  |||  |||||      |||||||
CGCGGATGCGGGAAACTTGGAGCATTGTGCCAAGTATTTGAACCAGACGCTCGTGACGTTCGGATTCCCGGCCTCGCTCGATCTGTTCGCCGGCGATCCGgtgcggagtgg-----------------ttgtttgtggattgttttgtgtggttttgggagtggggttttgattgttgcgtttttgcgcttttg------gtggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323206|gb|FK016337.1|FK016337
EST:     TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCC                         GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGA
genomic: TCGTCACGTTTGGTTTCCCGGCTTCGCTCGATCTCTTCGCAAATGACCCCgtgagtattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGA