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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTGgtaatgagtgatgaattcccttgtggattaactgtgtactgtgtaattgttttgacggttgcttcttgaaatgttgtttaacagtatgtggttgtgcgcttggtttgcag

Basic information

species Glycine max
transcript GLYMA17G06120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 3
TATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTGgtaatgagtgatgaattcccttgtggattaactgtgtactgtgtaattgttttgacggttgcttcttgaaatgttgtttaacagtatgtggttgtgcgcttggtttgcag
|||||||||||||||| | | |  || |||||||||||||  ||  || |||| ||||| ||||||||||||||||||     ||||  ||   ||       |  ||| |||  ||| ||   | | | | |   || | |  ||   |||   |    | || || | |  |    ||||||
TATGGTTGGTTGATCAGAACGGATTTCTGGTTTAGTTCAAGATCGCTGCGAGATTGGCCGCTTTTCATGTGTTGgtaaaagaagatgttttttatttccagcaa--tgt-tacattgttatacgtataatgatgagtt-tagtgatcaagttcctc----tttgattcttctttcttgttgcag

upper sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 3
TATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTGgtaatgagtgatgaa---ttcccttgtggattaactgtgtactgtgtaattgttttgacggttgcttcttgaaatg----ttgtttaacagtatgtggttg-----tgcgcttggtttgcag-------------
||||||||||| ||||   |||| ||||||||||||||||| ||||||||||| ||||| || || ||||| ||||||||  |  | ||   ||||||| |    ||  |||| |      ||| ||  ||  |  |  |  |||||||     | ||  | |  |   | |        | |  ||  ||| | |             
TATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTGgtaatgtttcctaaacgcttcccttttattctatttgtgaaagaatcaatcgtgatg-tgtatcttatttgaaataaatctagtccacctattaattgacacagaataccttttattttctggtctctcatgcag