Sequence
atgc intronic sequence ATGC exonic sequenceGTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaatttgggtagcttatacacatgtaaaaacatatacaatttactaattggctgctgcatgttacttggggcaatgcataggccgttcaattcctatat...
Basic information
species | Glycine max |
transcript | GLYMA17G05900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G05900.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G066672_T01 (Zea mays), 5'ss of exon 4
---GTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaatttgggtagcttatacacatgtaaaaacatatacaatttact-aattggctgctgcatgttacttggggcaatgcataggccgttcaattcctatat------------------------------------------------------------------
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ATGGTGGGCTGAAAACTATGACAAAGTTATGGAACTTTACAATGTGCAGAAGTTTAATC---AAACTGTCCCTCTCCCAGCTACCCCAAAATCTGAAGATGAGgtgaggaggccactcaatttgtttatctgttttttttaaaataattcaaggggctacacaccagttcctcacgcaacat-tctttctctctgtaccaatagctacagacatattttctttatgactggactgatacatcgttcgatgacatttgcttcttcccatag
upper sequence: GLYMA17G05900.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G429658_T01 (Zea mays), 5'ss of exon 3
GTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaatttgggtagcttatacacatgtaaaaacatatacaatttactaattggctgctgcatgttacttggggcaatgcata--ggccgttcaattcctatat-------------
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GTGGGCTGAAAATTATGACAGAATTATGGAACTTTACAATGTGCAGAGGTTTAACCAAACTGTCCCTCTAGTCCCGACTACCCCAAAATCTGAAGACGAGgtgaggacgctcagttttatttatttgttttttta-gtaattcaagggactacacccccagttcaacgcgtaatatgctttctatctgttccacggcattttcttcttcctatag
upper sequence: GLYMA17G05900.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G20540.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaatttgggtagcttatacacatgtaaaaacatatacaatttactaattggctgctgcatgttacttggggcaatgcataggccgttcaattcctatat
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GTGGGCAGATAACTATGACAAAGTAATGGAACTTTACAATGTTCAAAAACTAAGCCGCCAAGCTTTCCCGCTTCCCACCCCGCCTAGATCCGAAGACGAGgttagcctcttcactgaaaaatgtgtgacaat-----taaacccctgattagtcacta-atccctcttgga--aatctttgattag--------------
upper sequence: GLYMA17G05900.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 4
GTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaa---tttgggtagcttatacacatgtaaaaacatatac-aatttactaattggctgctgcatgttacttggggc--aatgcataggccgttcaattcctatat
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GTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtcctactcaaattgtatacaagaaatatgctacttgaagtcactaatggccttgcaccgtccacatcacttttaacatatgggcatctgtattt------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207799674|gb|GD770115.1|GD770115EST: TTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAG AGCTCAAAGCTTGAATCAGTAGAAGAAAGCCCTGTAACACCTCCACTGAAC
genomic: TTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaatttggg ... ttcataacagAGCTCAAAGCTTGAATCAGTAGAAGAAAGCCCTGTAACACCTCCACTGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaatttgggtagcttatacacatgtaaaaacatatacaatttactaattggctgctgcatgttacttggggcaatgcataggccgttcaattcctatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG