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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCGgtaagtaatcaattactagtcactttctctgacatactctaattaatgcaccgtttggacaatttcactccttaattaatcaattattaactcactctttttaattattcttccag

Basic information

species Glycine max
transcript GLYMA17G05660.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05660.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G35580.1 (Arabidopsis thaliana), 5'ss of exon 3
AATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCGgtaagtaatcaattactagtcactttctctgacatactctaattaatgcaccgt-ttggacaatttcactccttaattaatcaattattaactcactctttttaattattcttccag
 || ||   || ||||||||||||||||   ||||||||||||||  |||| ||  |||||||| | ||||| || || || || ||||||||||| || ||||| || || |       |   || | |||  |    |||    | ||||    | ||| |||| | |  |  |     |||| |   |   | |     || || ||  |    
CATCGCTTATGAAGCTGCAAAGGGTCTACAGTTTCTACATGAAGCCGAGAAGCCCATCATCTATCGCGATTTCAAGGCCTCTAATATCTTGTTAGATTCTgtaagcaagcatt-------cttcttttttgatct----taagggttacaccaaactagaccattttagttttagagcggacaataaccta--aaatggacatatttgtttct----

upper sequence: GLYMA17G05660.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 3
AATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCGgtaagtaatcaattactagtcactttctctgacatactctaattaatgcaccgtttggacaatttcactccttaattaatcaa-ttattaactcactctttttaattattcttccag
|||||||  ||| |||||||||||| |||| || || ||||||||  ||||||| || || ||| |||||||||| ||||||||||||||||| ||||| |||||    |   | ||   | |||  |      |||| | |     |||  |||  |     ||  ||   | || ||| |  ||||      ||| |||| |             
AATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTgtaag----cttctgctccccccttgtttgagagtactttca-----gcattgtt--gttggcttt-ctttgtgatcaatgaccttatggtgatactattttcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064506|gb|BU579279.1|BU579279
EST:     AACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCG                         GATTATAATGCAAAACTTTCCGATTTTGGCTTGGCCAAAGATGGTCCTGAA
genomic: AACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCGgtaagtaatc ... attcttccagGATTATAATGCAAAACTTTCCGATTTTGGCTTGGCCAAAGATGGTCCTGAA