Sequence
atgc intronic sequence ATGC exonic sequenceGATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGgtaggcttggcatttggctgtagaacatctggattattattatcaatttgcatgttgaattattgatatgatcaagaaaaacttattccaacatattata...
Basic information
species | Glycine max |
transcript | GLYMA17G05480.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G05480.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G22840.1 (Arabidopsis thaliana), 5'ss of exon 3
GATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGgtaggcttggcatttggctgtagaacatctggattattattatcaatttgcatgttgaattattgatatgatcaagaaaaacttattccaacatattata
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GATCACTTGGCATTGATGATGGAGCTTCTCGGGATGATGCCACGAAAGgtaaatccaaaaacacagtgt----tctcttatttatcaatatcaa---gaatagagc-tttttaaagggattttgttaaatgtag--------------
upper sequence: GLYMA17G05480.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G44850.1 (Arabidopsis thaliana), 5'ss of exon 3
GATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGgtaggcttggcatttg-----gctgta----gaacatctggattattattatcaatttgca-tgttgaattattgatatgatcaagaaaaacttattccaacatattata----------------------------------------------------------------------------------
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GATCACCTGGCATTGATGATGGAGCTTCTAGGGATGATGCCACGAAAGgtaaagctgataaacatagtcgttgtgttgtgaccatataagattgcatgatatatctctagtatcgaatcctttctaaagttggatcttagttgttttggttgcatatgactgcaaatcttgatggttgaaactcagaaaatagtagagcctaattttgtattgatgagcttcatttgttttcaaccgtag
upper sequence: GLYMA17G05480.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g01050.t01 (Vitis vinifera), 5'ss of exon 3
GATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGgtagg--cttggcatttg----gctgtagaacatctggattattattatcaattt----gcatgttgaattattgatatgatcaagaaaaacttattccaacatattata------------------------------------------------------------
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GATCACTTGGCGCTGATGATGGAGCTTCTTGGAATGATGCCGCGCAAGgtaagaccatggcatatgcatcgcttaaacaaatcaatttggttttgctcactttcttcacacctaactctatctaacagatttagataaccttatcatgctttacaccaaaaccaactatataacacctttattatattgctgcaagtgctgaacaatatttccctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20812020|gb|BQ296498.1|BQ296498EST: GCTTCTTGGGATGATGCCTCGCAAG ATTGCACTTGGTGGACGCTATTCCCGAGANNNNNNNAATAGATATGGCGAT
genomic: GCTTCTTGGGATGATGCCTCGCAAGgtaggcttgg ... ttgctttcagATTGCACTTGGTGGACGCTATTCCCGAGATTTTTTTAATAGATATGGCGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGgtaggcttggcatttggctgtagaacatctggattattattatcaatttgcatgttgaattattgatatgatcaagaaaaacttattccaacatattata
- - - - - - - - GATGGA
- - - - - - - - - - GGAGCT
- - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaaa