Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattctaaatattttcttcatttcttttctgtag

Basic information

species Glycine max
transcript GLYMA17G05440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 5
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttac-attttgatttagactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattctaaatattttcttcatttcttttctgtag
|||||||||||| ||||||||||||||| ||||||| || ||||| ||  |||||||||| ||||||||||||||||||||| ||||||| || || || ||  ||  || | |    ||  ||   |  |  | ||     || | ||| |  |||  | || | | |  |||  | |    | |   ||                
TGTGAGACCTTTCAATTGGATTGGACCAAGAATGGACTTTATTCCTGGTGTTGATGGTCCTAGTGAGGGTGTTCCTCGGGTTTTGGCATGTTTCAGTAACgtatgtcaaccagtccctttctgagaataatatacctc---catttcgttat-ggtcgtttttctcataagatgtatgtcgccaatgaatttgcag-----------

upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G167872_T02 (Zea mays), 5'ss of exon 3
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattctaaatattttcttcatttcttttctgtag
 ||||||||||||||||||||||| ||| | |||||||||||||| ||  | |||||||| ||||||||||| || ||||| ||||| ||||| || || ||  ||  || | ||  ||||    || | | ||  ||  |   ||  | ||   | |||   ||       ||   |  ||  |||                   
CGTGAGACCTTTTAATTGGATTGGGCCAAGGATGGATTTCATTCCTGGTGTCGATGGTCCTAGTGAGGGTGTACCCCGGGTGCTGGCTTGCTTCAGTAACgtatgtgcacttgtttttttatttattttctgagtatggttggcttaattttgcaccatagcattcttctgagaagatgcatggttttgcag--------------

upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G063949_T01 (Zea mays), 5'ss of exon 5
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagt----ttacattttgatttagac--tttgtttaagcttgtatatattgttgttagtcaatatttttaaata-atgattctaaatattttcttcatttcttttctgtag
 ||||||||||| ||||||||||||||| | ||||| |||||||| ||  |||||||||| ||||| ||||| ||||||||| |||| ||||| || || || |||    ||   | ||| |   ||   ||   ||||   | |||  |   |  | ||||  | |    | ||  | | | | ||   ||||                   
CGTGAGACCTTTCAATTGGATTGGACCAAGGATGGACTTCATTCCTGGTGTTGATGGTCCTAGTGAAGGTGTGCCTCGGGTTTTGGCTTGCTTCAGTAACgtaagtgttcttgtttcttggtgaggatcattatcttaattatttatgcaccatgttcagtct-tctcagaagatgcacggtaccaatggttttgcag---------------

upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagt--ttacattttgattta-gactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattctaaatattttcttcatttcttttctgtag
 ||  |||||||||| |||||||||||  | ||||||||||| ||||||||||||||||| || || ||||| || || || || || |||||||| || || |||  | | ||     | ||  ||    |   ||  ||| |||||         |  |   |||||  |||||  |||  || | |  ||||              
CGTACGACCTTTTAACTGGATTGGACCTAGGATGGATTTCATCCCCGGCATTGATGGTCCTAGCGAAGGTGTCCCACGTGTCCTTGCCTGCTTTAGTAACgtaagtgttcaaatccaagtatataacccaatgctagtctgtgtatat--------atgcaagcttttagttaatgcatctctatctatctttcag-------------

upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattc--taaatattttcttcatttcttttctgtag
||| ||||| || || |||||||||||  | ||||||||||| || |||||||||||||| || |||||||| || |||||||| || |||||||| || || ||| ||||   | | |   |  |    | || |  | |  || | ||    | ||  |||||   |||   ||   |   |||||||                  
TGTAAGACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGAGGGTGTCCCACGGGTTCTAGCGTGCTTTAGTAACgtaagtatacaggcttagtccaa--tgacctgagttcttct-catggctgcagcttaacttttttgtttaactttttggtgggtattttcag----------------

upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattcta-aatattttcttcatttcttttctgtag
|||||| || ||||| |||||||| ||  |||||||||| ||||| |||||||||||||| || ||||| |||||  |||||||||||||||| || ||||| |||||  |  |   |    || ||   ||   || | | | || || ||| |    || ||    |  |  | | | ||||                       
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttcaacatctgtcataacatttagtagtattttttttctttttcttactactgatcttgctctttttctcccacaatag----------------------

upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 5
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattctaaatattttcttcatttcttttctgtag
|||||| |||||||| |||||||| ||  |||||||||||||||| |||||||||||||| ||||| ||||||||  |||||||||||||||| |||||||| |||||  |  |   |    || | | ||  | |||    |||| ||     |  || |||||      ||  ||| |   |  ||||  ||      | ||||
TGTGAGGCCTTTTAACTGGATTGGGCCTAGAATGGATTTCATTCCTGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGGGTTCTGGCATGCTTCAGCAATgttagtttcaacatctgtcataacatggctt--gtttggtagtattttt-----ttcattttttt------tgtctctgatcttgctcttt-ttctcccaccgtag

upper sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S379_19V6.1 (Physcomitrella patens), 5'ss of exon 3
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagac----tttgtttaagcttgtatatat-tgttgttagtcaatatttttaaataatgattctaaatattttcttcatt-tcttttctgtag-----------------------------------
 ||  |||| || || |||||||| ||||| ||||||||||| || |||||||| || ||||||||     ||||||| || ||||||||||| |||||||| | |   ||       || | |      | ||   |||||   || | | || ||  | | ||||||||  | |   |   |  |    ||   ||| |  ||  ||| |                                   
AGTTCGACCATTCAACTGGATTGGCCCACGCATGGATTTCATACCAGGCATTGACGGACCAAGTGACTCAATTCCTCGTGTCCTGGCATGCTTCAGCAATgtaattcgccagcacttctttggcgcttcctcttcctgcttgcccatctgttttatttttaattatttttatttcaatttctcatttccgatcaaaattatgattggtgtggaggttatccacttgatctgatggcaaaaactgcag