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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTCGAGGTTGCCCTTGATACAAGGGCCTTCTTTTGTTTATCTGGCTCCGGTGTTGGCCATCATCAACTCCCCCGAATTTCAAGGATTAAATGGAAATgtgtgtttttcttctcatttctttttgtttcggatgatgtttctgttgttagttatttgtaatatgtcattggcttttgtattatctatatggtgaggtttttgatggggtaattgatactaagactgatgatgattttttttttttgtatcaattttcag

Basic information

species Glycine max
transcript GLYMA17G05280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05280.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 3
TGGGTCGAGGTTGCCCTTGATACAAGGGCCTTCTTTTGTTTATCTGGCTCCGGTGTTGGCCATCATCAACTCCCCCGAATTTCAAGGATTAAATGGAAATg-tgtgtttttcttctcatttctttttgtttcggatgatgtttctgttgttagttatttgtaatatgtcattggcttttgtattatctatatggtgaggtttttgatggggtaattgatactaagactgatgatgattttttttttttgtatcaattttcag
   ||||||| | || ||||| ||||| ||||| ||||| | |||||||||||  ||||| || || ||||| || || |||||||| || |||||||||  |||   |||      |   | | || |       | | | | || | | ||| |  ||| |   |||||||| ||  ||  |    ||||||||| |||  |   |   |  | |                                             
---GTCGAGGCTTCCTTTGATTCAAGGTCCTTCCTTTGTCTTTCTGGCTCCGGCTTTGGCTATAATAAACTCTCCAGAGTTTCAAGGTTTGAATGGAAATAATgtaagtttgaaagaagaacctcttct-------gctatctatgat-taagtaaaatgtca---gtcattgggttccgt--tgaggatatggtgatgttactatcgaaatg-tag---------------------------------------------

upper sequence: GLYMA17G05280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 3
TGGGTCGAGGTTGCCCTTGATACAAGGGCCTTCTTTTGTTTATCTGGCTCCGGTGTTGGCCATCATCAACTCCCCCGAATTTCAAGGATTAAATGGAAATgtgtgtttttcttctcatttctttttgtttcggatgatgtttctgttgttagttatttgtaatatgtca-ttggcttttgtattatctatatggtgaggtttttgatggggtaattgatactaagactgatgatgattttttttttttgtatcaattttcag
|||  ||||||||||||||||||| || ||||||||||||||| ||||||| |   | || || |||||||| || || || |||||||| ||||||||||| ||||| |  |   || | | ||| | |  |   |  ||  ||   |    ||||     | ||    |||| |  | | | |||       |    |  ||||                                                        
TGGCACGAGGTTGCCCTTGATACAGGGTCCTTCTTTTGTTTATTTGGCTCCAGCTCTTGCGATAATCAACTCTCCTGAGTTCCAAGGATTGAATGGAAATgtatgtttctagtgatatatgtatttatgt--ggctacattcatgagatagtgtattgtccttttgctggttggttactatgtgatc----ctatccattccttga--------------------------------------------------------