Sequence
atgc intronic sequence ATGC exonic sequenceTTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGgtaaggagaatatatgcgagtttagttaatttgtagaattttctcactgtggttatgttcactgatatggtttgatagaaaaaatagagaaagaatacaa...
Basic information
species | Glycine max |
transcript | GLYMA17G05010.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G05010.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g17130.1 (Oryza sativa), 5'ss of exon 3
TTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGgtaaggagaatatatgcgagtttagttaatttgtagaattttctcactgtggttatgttcact------gatatggtttgatagaaaaaatagagaaagaatacaa
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ATACAAACTTGGAACTGGCCTAGTAGTTGCTCGAAGATCAGATGGATCTTGGTCACCACCATCAGCAATCGTTTCAGTTGGGTTAGGATGGGGAGCACAGgtattaactacat-tgctaatttcatctctgtctttgatatggacaatttgttgtccatcaatttatgaaatgcgttttttttgtgttgttacacttaata-----
upper sequence: GLYMA17G05010.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G872216_T01 (Zea mays), 5'ss of exon 3
TTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGgt----aaggagaatatatgcgagtttagttaatttgtagaattttctcactgtggttatgttcactgatatggt-ttgatagaaaaaatagagaaagaatacaa
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TTACAAACTTGGAACTGGCCTAGTAGTTGCTCGAAGATCTGATGGATCATGGTCTGCACCATCTGCTATACTTTCTGCTGGTTTTGGATGGGGAGCACAGgtttgtatggtcaacttctaatacttcgcttaaatcataaaggcaacatatc-tggtgct-taaaggggtacggtgctcatgtgcacattttaaatttagga---
upper sequence: GLYMA17G05010.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g00400.t01 (Vitis vinifera), 5'ss of exon 3
TTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGgtaaggagaatatatgcga-gtttagttaatttgtagaattttctcactgtggttatgttcactgatatggtttgatagaaaaaatagagaaagaatacaa-
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TTACAAACTTGGCACTGGTTTGGTTGTTGCCCGAAGGTCAGATGGATCATGGTCTGCACCATCTGCCATATTCTCTGTCGGTTTAGGATGGGGTGCTCAGgtaaacataccatctgttatggttcttccattttatggtgccagtcagtgttaccatagttat--atgtttttttcttgagaaactagaatcagttttgttcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14205295|gb|BG838973.1|BG838973EST: TCCCTGGGTTTTAGGATGGGGTGCTCAG ATTGGGGGTGAACTTATGGGATTTTATAAGTTGTTCTTCGTGATATGAAAA
genomic: TCCCTGGG-TTTAGGATGGGGTGCTCAGgtaaggagaa ... gtattcccagATTGGTGGTGAACTTAT-GGATTTTAT-AGTTGTTCTTCGTGATATG-AAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGgtaaggagaatatatgcgagtttagttaatttgtagaattttctcactgtggttatgttcactgatatggtttgatagaaaaaatagagaaagaatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaga