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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGATTCTCAAAGAAGTACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagatttagaaaaaaaaatgtttttgtcctgctgaagctctatattttggcagtgttttgttgcatttcttgaatgctttgtttcacccgttggttttttgtgcag

Basic information

species Glycine max
transcript GLYMA17G04930.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04930.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 3
TTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGATTCTCAAAGAAGTACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagatttagaaaaaaaaatgtttttgtcctgctgaagctctatattttggcagtgttttgttgcatttcttgaatgctttgtttcacccgttggttttttgtgcag
    |||||||||||||  |  ||||||||||| || || |||||||||||| |||||||| |||| || |||||| | || |||||||| || |||  |||||| ||  | |        ||| ||  | |  ||    ||| || | |          ||    | |||   || |      || ||  |                
AAACTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGCTTTTCAAAGAAGTACCGGCATCCATCTTTGGACTCAAAACTCACTCTCAAGCGTTTGAATGCGgttagtttctggacctggg--gttcttacctttttgt--ttctgtaatataatgacacaatgccctacttccaaaacggcacccttgactag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309248|gb|FG999461.1|FG999461
EST:     ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG                         GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
EST: gi|151411775|gb|EV281586.1|EV281586
EST:     ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG                         GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
EST: gi|208051675|gb|GD854752.1|GD854752
EST:     ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG                         GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
EST: gi|192309249|gb|FG999462.1|FG999462
EST:     ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATG                         GAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG
genomic: ACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGgttagattta ... ttttgtgcagGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTG