1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGAAACAATTTTGAACGTCGCATGGCCCTGAGGAGGTCTTGGATGCAATATGAGGCCGTACATTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTTgtaagcgatgcatttcagacttgtttaagtgaaactatacattagtataattcttgttctagtttatgcacaagtttttcctagaagaattttgttaaag...
species | Glycine max |
transcript | GLYMA17G04230.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGCCGTACATTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTT CACAAGGAACAATAGGGTTAATTTTGAGTTATGGACTGAAGCTCAAGCATAEST: gi|193384803|gb|FK353161.1|FK353161
genomic: ATGAGGCCGTACATTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTTgtaagcgatg ... ttgattgcagCACAA-GAACAATAGGGTTAATTTTGAGTTATGGACTGAAGCTCAAGCATA
EST: TGAGGTCCGTACATTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTT CAC-AGAACAATAGGGTTAATTTTGAGTTATGGACTGAAGCTCAAGCATATEST: gi|193422220|gb|FK389679.1|FK389679
genomic: TGAGG-CCGTACATTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTTgtaagcgatg ... ttgattgcagCACAAGAACAATAGGGTTAATTTTGAGTTATGGACTGAAGCTCAAGCATAT
EST: ATTTTTCATTGGGCTT CACAAGAACAATAGGGTTAATTTTGAGTTTATGGACTGAAGCTCAAGCATA
genomic: ATTTTTCATTGGGCTTgtaagcgatg ... ttgattgcagCACAAGAACAATAGGGTTAATTTTGAG-TTATGGACTGAAGCTCAAGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAAACAATTTTGAACGTCGCATGGCCCTGAGGAGGTCTTGGATGCAATATGAGGCCGTACATTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTTgtaagcgatgcatttcagacttgtttaagtgaaactatacattagtataattcttgttctagtttatgcacaagtttttcctagaagaattttgttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT