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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGgtaatctttaaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacag

Basic information

species Glycine max
transcript GLYMA17G02580.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02580.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g47180.1 (Oryza sativa), 5'ss of exon 3
TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGgtaatcttta-aatgattaatt-tcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacag
 || || || || ||||| ||||| |||||| | ||||| || || || || |||||||||||| | || ||||| ||||| |||||||| || |||||||| | ||  | ||||||   || |  || |||| ||   ||     ||     ||||  ||| |  |||   |||        |||  |||   |       || ||||                                          
GGGCGCGACGGATTATGGCGTAGGCGTGGACTTGTGGAGCGCGGGATGTATCCTTGCTGAATTGCTCGCAGGGAAACCTATCATGCCTGGGCGGACCGAGgttagctacataatgatctgttattgttgtatagttatgctttagacacct--tgtag-cacatatctttcaaat--------attcagttcagcaccaaccaaagtttca----------------------------------------

upper sequence: GLYMA17G02580.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G873277_T01 (Zea mays), 5'ss of exon 3
TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGgtaatcttta-aatgattaatt-tcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacag
 || || || || ||||| || || || ||| | |||||||| || || || || ||||||||| ||||||| ||||||||||||||||| || || ||||| | ||  | |||| || |   |    | ||| | || || | |  |  |  ||   |  |   ||||| || |     ||| || ||||   |  |   |                                                 
GGGTGCGACGGATTATGGAGTTGGCGTAGACTTGTGGAGTGCAGGATGTATACTGGCTGAATTGCTGGCTGGAAAGCCTATTATGCCTGGACGGACTGAGgttagctacagaatgcttgaccgttgcatcatattctccctgaaa-taccatctg-gctatcagcacttgccatt----taaggttctgtttaccaaggctgcgaa---------------------------------------------

upper sequence: GLYMA17G02580.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g01890.t01 (Vitis vinifera), 5'ss of exon 3
TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGgtaatctt-----taaatgattaatttcattttataatttctctaagagcataagatgtattcactttacttgtcaatggtgcaagattttgttgctcgtgttagaaggtttgtgcttctgatttggttgatatatatccactgtgcttcacag
||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||| ||||||||||  |      || ||  ||||  | | ||  |   ||   |   |   | || || ||| | ||    |||   |  ||   ||  | |||  || ||                                                     
TGGGGCCACCGAATATGGTGTAGGTGTGGACCTCTGGAGTGCTGGCTGCATTCTAGCTGAGTTATTGGCCGGGAAGCCTATCATGCCTGGTCGCACCGAGgtaacttcaacaatatatatttaaaatgagttgttccattgctttgaacttttagttgcatt-atttgggctgtttgttatg-gcgaggtggttattcttgc----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845245|gb|BF068401.1|BF068401
EST:     TTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAG                         GTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAG
genomic: TTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGgtaatcttta ... tgcttcacagGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAG