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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCAACACCTGACAAAAGAGGATTTGAGCAAGCTCTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgcttttcttgtcattttcttccaccaacatcaccaatttattcatccgagttatgaaactccatcttgtattactttggctatcatgcctttcctt...

Basic information

species Glycine max
transcript GLYMA17G01550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01550.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G11860.1 (Arabidopsis thaliana), 5'ss of exon 3
TTCTTCAACACCTGACAAAAGAGGATTTGAGCAAGCTCTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgcttt----tcttgtcattttcttccaccaacatcacc--aatttattcatccgag---ttatgaaactccatcttgta--ttactttggctatca-tgcctttcctt-----------
| |||||||||||||| ||||| || ||||||||||| ||||||||  | ||||   |  ||||||| ||||| ||    ||||| ||||||||||| |||||   |||    | |    || | |||| |   | ||   |    || |   |  | |    | | ||       |  || |  |  | | ||  || | || || |  ||           
TGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGCAATTTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGgtaaaatttcatgtttcactatctgcttctagtcagatttgcttggttcaagtagacaatagctcaagaggaaaagttctgaagatctcataggtaatgaatgtctctgttttggtttttcag

upper sequence: GLYMA17G01550.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0116g01540.t01 (Vitis vinifera), 5'ss of exon 2
TTCTTCAACACCTGACAAAAGAGGATTTGAGCAAGCTCTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgcttttcttgtcattttcttccaccaacatcaccaatttattcatccgagttatgaaactccatcttgtattactttggctatc--atgcctttcctt
|||||||||||||||||||||||||||| |||||| | |  |||||||||||||   | ||||| ||||| ||  ||   || ||||| || ||||||||||||  ||||| | |  |||| ||||  |    |   || ||  ||    | ||||   |||    |    || |   ||  |  | |  ||   || ||||
TTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGTTATTTTTTGGGGAGTTCCAAATCTTGGATATCAACGGAGCAACCTGCTTTCTCACTAGGACAGGgtatagttttccttttctttttttcc--ctttcttctcatttcctttccactagtttaaaaataataatgggtctgggttgagggacctgattgattgcctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692090|gb|AW760205.1|AW760205
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|11413669|gb|BF425680.1|BF425680
EST:     TTACCAGGACACG                         ATATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|20815044|gb|BQ299522.1|BQ299522
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCACGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|17400633|gb|BM177415.1|BM177415
EST:     GTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: GTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|120530557|gb|EH258690.1|EH258690
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|120534357|gb|EH262490.1|EH262490
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAG
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGG-AAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAG
EST: gi|15663317|gb|BI700688.1|BI700688
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|22929190|gb|BU546329.1|BU546329
EST:     ACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATNNCAGTTCCTTCAGAGCATGGAGT
genomic: ACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|31561841|gb|CD487679.1|CD487679
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|37996377|gb|CF807966.1|CF807966
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|120533743|gb|EH261876.1|EH261876
EST:     TCCGTGTGTTGGACCATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGA
genomic: TCCGTGTGTTGGAC-ATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGA
EST: gi|27424988|gb|CA936508.1|CA936508
EST:     TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGG                         GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
genomic: TTCCGTGTGTTGGACATCAATGGCTCAGAGTGTTTTCTTACCAGGACAGGgtatgctttt ... ggactttcagGTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGT
EST: gi|31306665|gb|CD391868.1|CD391868
EST:     TACCAGGACA-G                         GTAATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAG
genomic: TACCAGGACAGGgtatgctttt ... ggactttcagGT-ATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAG