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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAACAGgtcttcagctctatccaaaagcactgtccttagtgtgtttttatttctatttgtcaataattgaataatcagattgttttgcgaaaaatggtttcttttctttggatcaccattggccaaatgattccagattttaagtgacatcaatgcagttgcccggatagttttagtctcataaattatatgatctttgtatgcag

Basic information

species Glycine max
transcript GLYMA17G00490.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00490.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 6
---TGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAACAGgtcttcagctctatccaaaagcactgtccttagtgtgtttttatttctatttgtcaataattgaataatcagattgttttgcgaaaaatggtttcttttctttggatcaccattggccaaatgattccagattttaagtgacatcaatgcagttgcccggatagttttagtctcataaattatatgatctttgtatgcag
   ||| || ||||||||||||||||||||||| ||||| |||||||| || || ||  |||||||||||       || |  | | |   | ||||||     || |||  | |       |    ||||  |   || | |||  |      ||| |||| |  |||     | ||  |                                                                                                                          
TTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAAAATATCCGACAGGAACGCAAAAAGgtt-----tgttta-gtttcc---tcttttcatatcatcctca-ttgtgcaatttattcttgtctcttaagtttctttgctc----atgtgaatagtaaaatggaatggttact--------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA17G00490.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 7
---TGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAACAGgtcttcagctctatccaaaagcactgtccttagtgtgtttttatttctatttgtcaataattgaataatcagattgttttgcgaaaaatggtttcttttctttggatcaccattggccaaatgattccagattttaagtgacatcaatgcagttgcccggatagttttagtctcataaattatatgatctttgtatgcag
   |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||                   || |||| ||   || ||  | | | | |  | |||   | ||        | | |  |  |      | |||  ||| |||        ||    || ||||                                                                                                              
TTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAGgtta-------------------gtcttttaaaacagtgttttgttttctgcttatgcatcattctgcacaaaatgtgaaataaaaacaa-agtaaaggaaaaata-------ttcataaagaatgc-------------------------------------------------------------------------------------------------------------