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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAAgtaagacccactttcacaccacaattgttttagaaatatcatgtttctcatcctcttactcttttttcatttctttttatag

Basic information

species Glycine max
transcript GLYMA17G00480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAAgtaagacccactttcacac-cacaattgttttagaaatatcatgtttctcatcctct-tactcttttttcatttctttttatag---------------------------------------------
||  ||||||| |||| |||||| |||| ||||||    ||  | ||||||||| |||| ||| |||||||||||||||||| |||||| |||||||||||||||| |  | |     | || |     ||||| |||    |||    |    |||  |       | || | | ||  ||                                               
ACACGGGCTCCTATTATCATTGATTTGAGTAGAGAAGAATCACTGAGCAGCAAGGCAATAATCTTGCAAATTGACAATAAAAATCAACAAGTTTCTGCAAgtaagagctccctatgtgcacatatgcaatttagcaatgatttgtgaagctatttctgcatgtaagatgcaatgcattagattaatatttgactaatatttccgtttttttcgaatgtgtgtattacag

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAAgtaagacccactttcacaccacaattgttttagaaatatcatgt-----ttctcatcctcttactctt------ttttcatt--tctttttatag----------------------------------
||  | ||||| || |  ||||||||||  || || |  ||||| ||||||||| |||| ||| ||||||| ||||||||| ||||||| ||||||||||||||| | |  | |   | || |     ||||| |||   ||||     |  |  | |  |||   |       |||  ||   |||| | |||                                   
ACACGAGCTCCTATAATAATTGAATTGAGCAGGGAGAGTTCTTTGAGCAGCAAGGCAATTATCTTGCAAATCGACAATAAATCTCAACAAGTTTCTGCAAgtaagtctctatctatgaacatatgcaatttagcaatgctatgtgaggctctttctgcatttatgataaaaaaatttcgatcagtcttctcataatatctccattgtgttctacatgggtatattttag

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 3
ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAAgtaagacccactttcaca----ccacaattgttttagaaatatc---atgtttctcatcctcttactcttttttcatttctttttatag---------------------------------------------------------------------------------------
||  | |||||||| |||||||| || ||||| ||  | ||| ||||||| |  || |||||  ||||||||||||||||| |||| || ||||||||||||||| ||   |  || |    | | |||| |  |        |   | |||   || | ||  |   |  | |   |    |  ||||                                                                                       
ACTCGCGCTCCCATAAGCATTGATTTAAATAGGGATGCTTCTGTAAGCAGTAGATCGATCATATTGCAAATTGACAATAAATCTCAGCAAGTTTCTGCAAgtaaggcctcttaccatagggcctataattttactttgctcccctaaaggttctccaccatcacatgttgatgtatatcaactgcatagatccattggtagcaatttaaaatggactgaattgttattatgatggctttaaccatgacccttgttttcttttttggtgtattatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318683|gb|GR828627.1|GR828627
EST:     CAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAA                         GTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTA
genomic: CAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAAgtaagaccca ... ctttttatagGTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTA