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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTTGGTGCTTATAAGATATTTTGGGGCTCTGGAGCTGTCATGGAGAATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttcagaaaaaaatggaacagcttgttcatcaactgtgacttaaattcacatattcttagaaaaaagaaatgagaagaaagagaagccactgct...

Basic information

species Glycine max
transcript GLYMA16G34570.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458692|gb|CD400720.1|CD400720
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|193393807|gb|FK359884.1|FK359884
EST:     AAGGGAGGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: AAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|298188911|gb|HO035604.1|HO035604
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|31459826|gb|CD401854.1|CD401854
EST:     ATCCAATCCTCCAAGACATAGCTAAGGCTAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCTACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|192317399|gb|FK011245.1|FK011245
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|22524326|gb|BU083137.1|BU083137
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|9259759|gb|BE347906.1|BE347906
EST:     ATCCAATCCTCCAAGACATAGCAGATGCAAAATGGAAGACCATAGCTCAT                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAATAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|12689180|gb|BG155516.1|BG155516
EST:     ACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|7284432|gb|AW597023.1|AW597023
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|7588574|gb|AW704367.1|AW704367
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAANAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|151401281|gb|EV271095.1|EV271095
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|209723422|gb|BW680363.1|BW680363
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|12689047|gb|BG155392.1|BG155392
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|51343795|gb|CO984528.1|CO984528
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|192298024|gb|FG991304.1|FG991304
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAG
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGG-TGTACCAACAAGGGTCAAGTGCCATGGCTAAAAG
EST: gi|209703294|gb|BW676203.1|BW676203
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|21601216|gb|BQ611547.1|BQ611547
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|13787352|gb|BG649944.1|BG649944
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|6069723|gb|AW099347.1|AW099347
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAANAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|120532091|gb|EH260224.1|EH260224
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|151412793|gb|EV282605.1|EV282605
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         -TTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAA-GC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|209723132|gb|BW662508.1|BW662508
EST:     AAGACATAGCAAAGGCAAAAGGGAAGNCCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: AAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|213610751|gb|DB974842.1|DB974842
EST:     TCCAAGACATAGCAAAGGCAAAAGGGAAGAACATAGCTCAG                         GTTGCACCTT-GATGGG-GAAACCAACAAGGGTCAAGTGCCATGGCTAAAA
genomic: TCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCA-CTTAGATGGGTG-TACCAACAAGGGTCAAGTGCCATGGCTAAAA
EST: gi|151399626|gb|EV269497.1|EV269497
EST:     GGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: GGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: gi|209712330|gb|BW671180.1|BW671180
EST:     ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG                         GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTCTTGGTGCTTATAAGATATTTTGGGGCTCTGGAGCTGTCATGGAGAATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttcagaaaaaaatggaacagcttgttcatcaactgtgacttaaattcacatattcttagaaaaaagaaatgagaagaaagagaagccactgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaga