1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCTCTTGGTGCTTATAAGATATTTTGGGGCTCTGGAGCTGTCATGGAGAATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttcagaaaaaaatggaacagcttgttcatcaactgtgacttaaattcacatattcttagaaaaaagaaatgagaagaaagagaagccactgct...
species | Glycine max |
transcript | GLYMA16G34570.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|193393807|gb|FK359884.1|FK359884
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: AAGGGAGGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|298188911|gb|HO035604.1|HO035604
genomic: AAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|31459826|gb|CD401854.1|CD401854
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCTAAGGCTAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCTACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|192317399|gb|FK011245.1|FK011245
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|22524326|gb|BU083137.1|BU083137
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|9259759|gb|BE347906.1|BE347906
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAGATGCAAAATGGAAGACCATAGCTCAT GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAATAGCEST: gi|12689180|gb|BG155516.1|BG155516
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|7284432|gb|AW597023.1|AW597023
genomic: ACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|7588574|gb|AW704367.1|AW704367
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAANAGCEST: gi|151401281|gb|EV271095.1|EV271095
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|209723422|gb|BW680363.1|BW680363
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|12689047|gb|BG155392.1|BG155392
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|51343795|gb|CO984528.1|CO984528
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|192298024|gb|FG991304.1|FG991304
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGEST: gi|209703294|gb|BW676203.1|BW676203
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGG-TGTACCAACAAGGGTCAAGTGCCATGGCTAAAAG
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|21601216|gb|BQ611547.1|BQ611547
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|13787352|gb|BG649944.1|BG649944
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|6069723|gb|AW099347.1|AW099347
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAANAGCEST: gi|120532091|gb|EH260224.1|EH260224
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|151412793|gb|EV282605.1|EV282605
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG -TTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAA-GCEST: gi|209723132|gb|BW662508.1|BW662508
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: AAGACATAGCAAAGGCAAAAGGGAAGNCCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|213610751|gb|DB974842.1|DB974842
genomic: AAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: TCCAAGACATAGCAAAGGCAAAAGGGAAGAACATAGCTCAG GTTGCACCTT-GATGGG-GAAACCAACAAGGGTCAAGTGCCATGGCTAAAAEST: gi|151399626|gb|EV269497.1|EV269497
genomic: TCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCA-CTTAGATGGGTG-TACCAACAAGGGTCAAGTGCCATGGCTAAAA
EST: GGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGCEST: gi|209712330|gb|BW671180.1|BW671180
genomic: GGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
EST: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAG GTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
genomic: ATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttc ... gtcatttcagGTTGCACTTAGATGGGTGTACCAACAAGGGTCAAGTGCCATGGCTAAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCTTGGTGCTTATAAGATATTTTGGGGCTCTGGAGCTGTCATGGAGAATCCAATCCTCCAAGACATAGCAAAGGCAAAAGGGAAGACCATAGCTCAGgtaaattttcagaaaaaaatggaacagcttgttcatcaactgtgacttaaattcacatattcttagaaaaaagaaatgagaagaaagagaagccactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaga