1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGTTTATGAGGCTTTGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGgtgcttgatgttccctttaccattttagtttttttttgttttcgatttttttgtgatgtgttggagctgatgacaagatttcatatttgccttggattag
species | Glycine max |
transcript | GLYMA16G32960.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGTTCTTAAG GCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAGEST: gi|213611484|gb|DB959194.1|DB959194
genomic: GTGTTCTTAAGgtgcttgatg ... cttggattagGCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAG
EST: TGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAG GCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAGEST: gi|213587887|gb|DB959711.1|DB959711
genomic: TGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGgtgcttgatg ... cttggattagGCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAG
EST: TGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAG GCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAGEST: gi|254343118|gb|GR859280.1|GR859280
genomic: TGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGgtgcttgatg ... cttggattagGCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAG
EST: TGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAG GCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAG
genomic: TGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGgtgcttgatg ... cttggattagGCTGTGGAGAATGTTAATTCAATTATAGCACCTGCTCTGCTTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTATGAGGCTTTGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGgtgcttgatgttccctttaccattttagtttttttttgttttcgatttttttgtgatgtgttggagctgatgacaagatttcatatttgccttggattag
- - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - TGGAGG