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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAAATTGATCACTCTGATGCCATTATTGgtttttggttaattcaggttgtcgtatactagtagaaggtattgtaggatgcaatattgtttattttttcctccttttcttcctcatatatacttatggaagctacttgtttattttgaatcacag

Basic information

species Glycine max
transcript GLYMA16G32870.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32870.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G51720.1 (Arabidopsis thaliana), 5'ss of exon 12
TCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAAATTGATCACTCTGATGCCATTATTGgtttttggttaattcaggttgtcgtatactagtagaaggta-----ttgtaggatgcaatattgtttattttttcctccttttcttcctcatatatacttatggaagctacttgtttattttgaatca--cag--------------------
                                 |||||||||||||| |||||| |  ||||||| ||||||||| |||||||  | |||||||||| |      |||| ||| |||| || ||| |||| ||||||||||     || |   ||  |  |    ||       |   | |||  |  | |  |    || | |  | |  ||  |||  ||     |  |||                    
---------------------------------GAAAGGTGTGATGTGGCATTTCCTTGTGCTTCTCAGAATGAAGTTGATCAAGCGGATGCCATTAAT-----CTGGTCAATGCAGGATGCCGTTTACTGGTAGAAGgtagagatttcttatatcaagcaactatttcagggcctctcgttttgtgtttacgttaggtttttgctgttcttttgttaccttatcctaagcagtatggatgttttttgtgcag

upper sequence: GLYMA16G32870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 11
TCCAGATATTATGATGAAGCAAAACCGTGGAATGAAAGGTGTGATGTTGCATTTGCAGGTGCTTCACAGAATGAAATTGATCACTCTGATGCCATTATTGgtttttggttaattcaggttgtcgtatactagtagaaggtattgtaggatgcaatatt-gtttattttttcctccttttcttcctcata-----------tatacttatgga-agctacttgtttattttgaatcacag-----------------------------------------------
                                 ||||||||||||||||||||| |  ||||||| ||||||||||| || || ||||||||||| | |     ||||| ||||||||||| || |||||| |||||||||  |||   | || | ||  | |  || ||| ||| | |  || |               |||  ||||    ||| |  |  ||||| | | |  ||                                                
---------------------------------GAAAGGTGTGATGTTGCATTTCCTTGTGCTTCTCAGAATGAAATCGACCAATCTGATGCCATAAAT-----TTGGTAAATTCAGGTTGCCGGATACTAATAGAAGgta--gtaaagttcagtgtttatcttcttgttcttccgtctgatcattgctgttgtcattattatcattatcatcagcaatattattattatcattatcaacattattattgttggtgctagaacttatatcaccatttttctcttag