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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGTTTATATCTTGGACAATTGAATTACATTTTCACTCAACAGATATTGTTTTACTCGACCATGGgtgagtaacatagatgaatcctttgatttggaatacaatactactacaccttatattcctattgcatgcttggactctaatgaatacaatttttaaattatgctcatgttctccag

Basic information

species Glycine max
transcript GLYMA16G32840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32840.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g00120.t01 (Vitis vinifera), 5'ss of exon 2
-----------------------------GAAGAAGTTTATATCTTGGACAATTGAATTACATTTTCACTCAACAGATATTGTTTTACTCGACCATGGgtgagtaacatagatgaatcctttgatttggaatacaatactactacaccttatattcctattgcatgcttggactctaatgaatacaatttttaaattatgctcatgttctccag
                               | || |  ||  ||||||| |||||||  |  ||||| |||||||| ||||||||||||||||| |||||||     |     | || | |  |   ||   |  |  || ||  | |  || || |||   ||  ||    |  | ||| |    |  |   ||||                
CATTACCCTTTTCATATATTTTTGACTAGAGATAAATGCATTACTTGGACGATTGAATGGCGGTTTCATTCAACAGACATTGTTTTACTCGACCACGGgtgagctctcttacctattcttatcttcaagagagcttttataatagtcttcctagtc-tatcaaatttttttgtttcattgatttatttaatgttattacag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7587909|gb|AW703715.1|AW703715
EST:     ACAATTGAATTACATGTTCACTCAACAGATATTGTTTTACTCGACCATGG                         AGTTGATGAAAATACA
genomic: ACAATTGAATTACATTTTCACTCAACAGATATTGTTTTACTCGACCATGGgtgagtaaca ... tgttctccagAGTTGATGAAAATACA