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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAGAGCGGATGGAGAACGTGAATTCTTGTTTTTCCGCAATCCAAGCGCTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaatatctgtttgtattttatgaaatgctgctctgagacctttgatctaatcatgattttcataacattgattttag

Basic information

species Glycine max
transcript GLYMA16G32530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32530.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 3
ACTTAGAGCGGATGGAGAACGTGAATTCTTGTTTTTCCGCAATCCAAGCGCTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttg-----gaatatctgtttgtattttatgaaatgctgctctgagacc---tttgatctaatcatgattttcataacattgattttag-------------------------------------------------------
||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||  | || || ||||||||||||  | |  | ||  ||||||| | |      |  ||  | |||   |||  | || |  |  | ||| |         | ||  |  |  ||||| |    |   || |||                                                       
ACTCAGAGCTGATGGTGAACGAGAATTTTTGTTTTTCCGTAATCCAAGCGCTGATATGCTTTTCCATGAATCAGAACTTGATTTAAAACTTCTTGAGCAGgtatgtatgcgagtgtacattttttcttttccttaatttttattgtgaaatggagcacaacctttttgtt-ttttctttttttcttttctagcagaggagctaatttggttaaaaattttgcattttctaaataattttgaatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339783|gb|GR857908.1|GR857908
EST:     AGAGTCAGAACTTGATAAAGATAT-CTAAAGCAG                         GCTAGAAATATTCCATTATGGCTCCATCAGCTTGA-TGATGAGCCATGCAA
genomic: AGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAG-AATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAA
EST: gi|7685312|gb|AW755960.1|AW755960
EST:     CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG                         GCTAGAATATTTCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: gi|254342487|gb|GR858649.1|GR858649
EST:     CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG                         GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: gi|254339782|gb|GR857907.1|GR857907
EST:     CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG                         GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: gi|15815232|gb|BI787507.1|BI787507
EST:     CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAG                         GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
genomic: CTGATATGCTCCTTCAAGAGTCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
EST: gi|254342488|gb|GR858650.1|GR858650
EST:     TCAGAACTTGATAAAGATAT-CTAAAGCAG                         GCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG
genomic: TCAGAACTTGATAAAGATATCCTAAAGCAGgtgtttggaa ... ttgattttagGCTAGAATATTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAG