1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAATGTTGATCCAAAGCAAATTGGACATTTGGCGGTTGGGAGTGAAACTGTTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAGgtaagttattctctgtttagatattgagtgttgaccctcaccttataagattattggattctatagattttcacagtcacaatatcttcccatatctaga...
species | Glycine max |
transcript | GLYMA16G32480.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAG GCAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATEST: gi|192293854|gb|FG986063.1|FG986063
genomic: TTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAGgtaagttatt ... caacaatcagGCAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTAT
EST: TTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAG GCAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATEST: gi|19052496|gb|BM731163.1|BM731163
genomic: TTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAGgtaagttatt ... caacaatcagGCAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTAT
EST: TTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAG GCAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTAT
genomic: TTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAGgtaagttatt ... caacaatcagGCAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATGTTGATCCAAAGCAAATTGGACATTTGGCGGTTGGGAGTGAAACTGTTATTGACAAAAGCAAATCAATTAAGACCTTCCTGATGCAAGTTTTTGAGgtaagttattctctgtttagatattgagtgttgaccctcaccttataagattattggattctatagattttcacagtcacaatatcttcccatatctaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA