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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCTTGGGTCTTTGTTGGGATACCCAATTTTGTCAAGgtaagaaagaacacaaatagggatctctttttgtttttctctcattttgtactgtcaatttttaaacaaagtatatctctctaatttagtgacatgtttttgccaaggtatgctctttccactgcttataacatcataattaatgttattttggttaatgatattggtgctgcag

Basic information

species Glycine max
transcript GLYMA16G32370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32370.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0100g00320.t01 (Vitis vinifera), 5'ss of exon 4
TGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCTTGGGTCTTTGTTGGGATACCCAATTTTGTCAAGgtaagaaagaacacaaatagggatctctttttgtttttctctcattttgtactgtcaatttttaaacaaagtatatctctctaatttagtgacatgtttttgccaaggtatgctctttccactgcttataacatcataattaatgttattttggttaatgatattggtgctgcag
||    |||||| | ||||||||||| ||||| || |||||||| ||||| ||||| ||| | ||||| || ||||| ||| |||| |||||  |   |||  | ||     ||||| ||   |||| |||| ||| | ||   |  | | |||     | ||| | | |||  |||  |      ||||     |  || |                                                               
TGCACTGGTGTGGTTAATCTTGGTGGAGAAGTTGGCTGTATGATTAGTGAGGGCCCATGGTTGTTTGTGGGTATACCAAATGTTGTTAAGgtgggtttgaatgcgaa-----atctccttcc-ttttgctcttattatatatactatagtattattactactatttttttctttttttct------ttttataggaaataag---------------------------------------------------------------

upper sequence: GLYMA16G32370.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0022g02530.t01 (Vitis vinifera), 5'ss of exon 3
TGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCTTGGGTCTTTGTTGGGATACCCAATTTTGTCAAGgtaagaaagaacacaaatagggatctctttttgtttttctctcattttgtactgtcaatttttaaacaaagtatatctctctaatttagtgacatgtttttgccaaggtatgctctttccactgcttataacatcataattaatgttattttggttaatgatattggtgctgcag
|     |||||| | ||||||||||| ||||| || |||||||| ||||| ||||| ||| | ||||| || ||||| ||| |||| |||||  |   |||  ||||     ||||| |    |||| |||| ||| | ||   |  | | |||    |     || | | |  |||  |      ||||||  | |  |                                                                 
TCCACTGGTGTGGTTAATCTTGGTGGAGAAGTTGGCTGTATGATTAGTGAGGGCCCATGGTTGTTTGTGGGTATACCAAATGTTGTTAAGgtgggtttgaatgcaaa-----atctcctccc-ttttgctcttattatatatactatagtatta--tcactaccatttttgttgtttttttgt---tttttgataggaaac----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590921|gb|AW706664.1|AW706664
EST:     TGATCAGTGAAGGCCCTTGGGTCTTTGTTGGGATACCCAATTTTGTCAAG                         GCCTGGAACACACAAAATTTATCAGAGCTAAGTCTTAATGGTCCTGTTGGA
genomic: TGATCAGTGAAGGCCCTTGGGTCTTTGTTGGGATACCCAATTTTGTCAAGgtaagaaaga ... ggtgctgcagGCCTGGAACACACAAAATTTATCAGAGCTAAGTCTTAATGGTCCTGTTGGA