1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatcaattatagaattatctcaccacaacctggccgttcttgtacttttggcttgaacgcttaaattatgtagttattagtattgccatattttgagaaactctatgattgcactgatgatcataccctggtcactgcag
species | Glycine max |
transcript | GLYMA16G29860.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGEST: gi|21888915|gb|BQ742128.1|BQ742128
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGEST: gi|208286423|gb|GE086509.1|GE086509
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: ATGGAAGTGGCTGGAAATACTGCATTACGG TTCCGGCAAGCTAAAACTGAGATTGTATCAGCTAGCAAAGTAGCATACCGGEST: gi|9203277|gb|BE329501.1|BE329501
genomic: ATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: ATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGG TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGEST: gi|31466273|gb|CD408301.1|CD408301
genomic: ATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: TGGAAGTGGCTGGAAATACAGCATTACGG TTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGGEST: gi|193523744|gb|FK482203.1|FK482203
genomic: TGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACTGCATTACGG TTCCGGCAAGCTAAAACTGAGATTGTATCAGCTAGCAAAGTAGCATACCGGEST: gi|193492066|gb|FK453482.1|FK453482
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAGCAAGCAAAGTAGCATACCGG
EST: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACTGCATTACGG TTCCGGCAAGCTAAAACTGAGATTGTATCAG
genomic: CCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatca ... gtcactgcagTTCCGGCAAGCTAAAACTGAGATTGTATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGGTGAATAGGTTTGCCAATGCTGGTGATACTGCCATGGAAGTGGCTGGAAATACAGCATTACGGgtaagaatcaattatagaattatctcaccacaacctggccgttcttgtacttttggcttgaacgcttaaattatgtagttattagtattgccatattttgagaaactctatgattgcactgatgatcataccctggtcactgcag
- - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - GCTGGA