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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGgtaactactagacccatcactaaacatctattagaggttgttaaggtcatgtctcattggaaataatttttaatgtctctttttatttttatttcattag

Basic information

species Glycine max
transcript GLYMA16G29780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29780.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 14
CTTCCTG---TGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGgtaactactagacccatca-ctaaacatctattagaggttgttaaggtcatgtctcattggaaataatttttaatgtctctttttatttttatttcattag
|||  ||   |  | |||||||||||   |||||| ||||     | |||||||  |   ||||||||||||||||| || |||||||||||  ||||||| ||||   |  | ||   | | |  | ||  | ||        ||      |||   ||| |      ||||||||||   || |  ||              
CTTATTGAAATATTGCCATCATATGGAGCAGGAAGAGATG---GAGGTGGAAGGCATGCCAGTCTCATTTTTGGAACAAATCTCACTGATGTCGTAATCACAGgtactaataacacttttaagcccatcacttttttacacacatttt--ctatggtccatgg---tccatttttaatggggctgtccatcag-----------

upper sequence: GLYMA16G29780.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01110.t01 (Vitis vinifera), 5'ss of exon 3
---CTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGgtaactactagacccatcactaaacatctattagaggttgttaaggtcatgtctcattgg----aaataattt-ttaatgtctctttttatttttatttcattag
    ||   ||  | |||||||||||    ||||| ||||     | |||||||  |||||| || ||||||||||| ||||||||||||||  |||| || |||||  |  | ||             | |  | |||| |         |||   ||||||     || | ||| ||||||   |  || |               
CTTATTGAAGTTTTGCCATCATATGGAGTGGGAAGAGATG---GAGGTGGAAGGCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataacactttgggactgttgtatgcttgaggataagttatatatgcaccattggctaagaacattttgttaatgggacccttcaccag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396511|gb|EV266388.1|EV266388
EST:     GTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTG                         GTTACAATGGGACAATTGATGGACAAGGGTGTTATTGGTGGGACAAGTTCC
genomic: GTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGgtaactacta ... atttcattagGTTACAATGGGACAATTGATGGACAAGGGTGTTATTGGTGGGACAAGTTCC