1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCCGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatctttcaccatttattttttagacaacttaagtgcatttatatctaattatttataattgacatctggcag
species | Glycine max |
transcript | GLYMA16G29740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCTGTACTCTCACAAGTATCCGGGCGTTTTCAGTCTTCATCTGCTTTGCEST: gi|120531306|gb|EH259439.1|EH259439
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... catctggcagCTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
EST: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCEST: gi|120528794|gb|EH256928.1|EH256928
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... catctggcagCTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
EST: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCEST: gi|6666602|gb|AW278061.1|AW278061
genomic: GCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... catctggcagCTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
EST: AGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATG CTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
genomic: AGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatct ... catctggcagCTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCCGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGgtcataatctttcaccatttattttttagacaacttaagtgcatttatatctaattatttataattgacatctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC