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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatctttgcttttgtttcaagaagcacaattaatacatgtcatgcagcatcaaggaatcaatgatttttattaacaaaattgcttgtaattatttttgcag

Basic information

species Glycine max
transcript GLYMA16G29660.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404533|gb|EV274347.1|EV274347
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|6072395|gb|AW101782.1|AW101782
EST:     AGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: AGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|120530896|gb|EH259029.1|EH259029
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|8825950|gb|BE209680.1|BE209680
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATTC-TGTTG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGAT-CGTGTTG
EST: gi|151405059|gb|EV274873.1|EV274873
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|6341369|gb|AW164193.1|AW164193
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|9984485|gb|BE658593.1|BE658593
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|10234078|gb|BE802966.1|BE802966
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG
EST: gi|192294693|gb|FG986542.1|FG986542
EST:     TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAG                         GGGTTGAATCAGTTTCTGTTCATATGAAAGACATGAAAATGATCGTGTTGG
genomic: TGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatcttt ... atttttgcagGGGTTGAATCAGTTTCTGTTGATATGAAAGACATGAAAATGATCGTGTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGTAGTCTTACAGTTGGACTTACATGGTGATAGAATCAAGCAAAAAGCTATGAAAACAGCATCTGGCCTTTCAGgtacatctttgcttttgtttcaagaagcacaattaatacatgtcatgcagcatcaaggaatcaatgatttttattaacaaaattgcttgtaattatttttgcag

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