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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagtttttcctcattgcattccctctagtcgttcctgacattaatttaagcttcaattttgttttctctctgggaagttgtgacattctcatttaattcagaaactttcggactgattttttcttgggtgttttgcatttctagaaaagtaatttttctaatgtcttctacag

Basic information

species Glycine max
transcript GLYMA16G29590.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401823|gb|EV271636.1|EV271636
EST:     CCCATNNNNNNNTTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT                         ATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
genomic: CCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagttttt ... tcttctacagATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
EST: gi|209707453|gb|BW664912.1|BW664912
EST:     CCCATNNNNNNNTTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT                         ATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
genomic: CCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagttttt ... tcttctacagATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
EST: gi|192294951|gb|FG986670.1|FG986670
EST:     CCCATNNNNNNNTTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT                         ATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
genomic: CCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagttttt ... tcttctacagATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagtttttcctcattgcattccctctagtcgttcctgacattaatttaagcttcaattttgttttctctctgggaagttgtgacattctcatttaattcagaaactttcggactgattttttcttgggtgttttgcatttctagaaaagtaatttttctaatgtcttctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT