1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagtttttcctcattgcattccctctagtcgttcctgacattaatttaagcttcaattttgttttctctctgggaagttgtgacattctcatttaattcagaaactttcggactgattttttcttgggtgttttgcatttctagaaaagtaatttttctaatgtcttctacag
species | Glycine max |
transcript | GLYMA16G29590.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCATNNNNNNNTTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT ATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCCEST: gi|192297883|gb|FG988353.1|FG988353
genomic: CCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagttttt ... tcttctacagATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
EST: CCCATNNNNNNNTTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT ATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCCEST: gi|151405551|gb|EV275365.1|EV275365
genomic: CCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagttttt ... tcttctacagATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
EST: CCCATNNNNNNNTTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT ATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCCEST: gi|151407484|gb|EV277299.1|EV277299
genomic: CCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagttttt ... tcttctacagATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
EST: CCATNNNNNNNNTTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCT ATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
genomic: CCAT-AAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagttttt ... tcttctacagATTAAGGAGCTGTCAAATGTCAAAGAGGAAGTTTATGGAGCTCTTGATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGTGCTGCAAAAGGTCAAAGACCAAGATATCCCCGAGTTTGGAAGACCCATAAAAAAATTGGGACCATTTCCAAGGCTGCCAAGCTTGTTAACTCTgtaagtttttcctcattgcattccctctagtcgttcctgacattaatttaagcttcaattttgttttctctctgggaagttgtgacattctcatttaattcagaaactttcggactgattttttcttgggtgttttgcatttctagaaaagtaatttttctaatgtcttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT