Sequence
atgc intronic sequence ATGC exonic sequenceAACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGgtaatttttcatggcttctcattttatttgatttatctggtcgcatacatatattttaccttttacgttttcccttgtacag
Basic information
species | Glycine max |
transcript | GLYMA16G29040.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g12660.1 (Oryza sativa), 5'ss of exon 3
AACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGgtaatttttcatggcttctcattttatttgatttatctggtcgcatacatatattttaccttttacgttttcccttgtacag
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AACTTTACCAGCAAATGCTTGCCAAAGCGCTTGCCCACTATTTTGAAGCAAAATTGCTGTTGCTAGATCCTACAGATTTTCTCATAAAGgtgagtttggctggca-cagatttcctttcatgtacatttttaagtatgtttgtgatacagact----tttcttcctcacag
upper sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 4
AACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGgt-aatttttcatggcttctcattttatttgatttatctggtcgcatac-atat-attttacctt-ttacgttttcccttgtacag
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AACTTTACCAGCAAACACTTGCCAAAGCTTTAGCACATTTCTTTGAAGCAAAGTTGCTGCTATTGGATGTTAATGACTTTTCTCTAAAGgtgaaacatgtacagactcaatcatcctgaagtttatct--ttgcatgctatatcactaaatcttgctatgattgccatttcacag
upper sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 4
AACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGgt-aatttttcatggcttctcattttatttgatttatctggtcgca-tacatatattttacctt-ttacgttttcccttgtacag
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AACTTTATCAGCGAGCACTCGCCAAAGCTTTAGCACAATTCTTTGAAGCAAAGTTGCTGCTGTTGGATGTTAATGACTTTTCTCTAAAGgtgaaatatgcactaactcaatcttcctcaaatttagcttttgatactacat-cactaaatctcactatgattggcatttctcag
upper sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 3
AACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGgtaattttt---catggcttctca--ttttatttgatttatctggtcgca-tacatatat-------tttaccttttacgttttcccttgtacag
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AACTGTACCAGCAAACACTCGCCAAAGCTCTAGCTCATTTCTTCCAAGCAAAGTTGCTGCTGTTGGACCTTAATGACTTTTCTCTGAAGgtgaaattaatatgtagagactcaatcttccttaaatttagcttttcatactgtatatatcgctaaatcttgctgctatgattgtcatttctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10237477|gb|BE806365.1|BE806365EST: TTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTCTCTGTGAAG TTGCAGAATAAATTTGGATGTTCTAGAAAAGAACCA
genomic: TTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGgtaatttttc ... ccttgtacagTTGCAGAATAAATTTGGATGTTCTAGAAAAGAACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACCTTACCAGCAAATGCTTGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTGCTGTTGTTAGATATTACTGACTTTTCTGTGAAGgtaatttttcatggcttctcattttatttgatttatctggtcgcatacatatattttaccttttacgttttcccttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT