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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACTATTCAGAGAGGTGTTGGAACTGCTGATTGTGTTAGTGTGAACTACGATGATTTTGTGAATGATGTGGAAATGGGGGACATGCTTCTTGTCGATGgtatggttatcaactgatcaactaaaatgttcgaactccataaactttttgttatgctgatggattgataaattagcacttcaacataagtgtaatttat...

Basic information

species Glycine max
transcript GLYMA16G28980.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTACTATTCAGAGAGGTGTTGGAACTGCTGATTGTGTTAGTGTGAACTACGATGATTTTGTGAATGATGTGGAAATGGGGGACATGCTTCTTGTCGATGgtatggttatcaactgatcaactaaaatgttcgaactccataaactttttg--ttatgctgatggattgataaattagcacttcaacataagtgtaatttat
||||| ||| ||||||| ||  | ||  |   |||||| ||||| ||||| |||||||| || ||||| ||||||  ||| |||||||||||||| |||||||||   |||   | || |  |    |    |   |  | |     |||    | | |  ||  ||||||      || |||  ||     ||||      
TTTACAATTGAGAGAGGAGTCAGCACACCAAGTTGTGTCAGTGTTAACTATGATGATTTCGTTAATGACGTGGAAGCGGGTGACATGCTTCTTGTTGATGgtatgtacatc---ttattatttggtgtacaagggttttacatctgctttagtcttttccaatatattgatg-----gcgcttttactatgttgtag-----

upper sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 3
TTTACTATTCAGAGAGGTGTTGGAACTGCTGATTGTGTTAGTGTGAACTACGATGATTTTGTGAATGATGTGGAAATGGGGGACATGCTTCTTGTCGATGgtatggttatcaactgatcaactaaaatgttcgaactccataaactttttgttatgctgatggattgataaattagcacttcaacataagtgtaatttat--
|| || ||||| ||||| ||||| || || |||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| || |||||||||         |  |    | | |         |   ||      |  ||    |  |   |  || | || |  |  | || ||     |||| |   
TTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGgtatgaaaccatgttttttctgtcatacaaataggttttgtagtaacctctttcctttactt--tccatcagtttgttcacccacttatcctcaattaactt