Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATTAGCAGTAACCCTGCAGTTCCTCTTCCCACTGATGAAGTTGACTCTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctctctctctctctcatttttttaatacattcttttcttattctctcctccatttatttaataaaattcatgtttccatctaaataataaatga...

Basic information

species Glycine max
transcript GLYMA16G28090.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193546940|gb|FK502333.1|FK502333
EST:     CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATTCTTTTGGACT
genomic: CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGAT-CTTTTGGACT
EST: gi|11414209|gb|BF426220.1|BF426220
EST:     CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
genomic: CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|208030252|gb|GD830278.1|GD830278
EST:     TCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
genomic: TCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|208096403|gb|GD893790.1|GD893790
EST:     CTTCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGA-CCTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
genomic: CTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|151413029|gb|EV282837.1|EV282837
EST:     CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
genomic: CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|207781693|gb|GD751430.1|GD751430
EST:     CTTCCCACCTCTAGTTGGTTCATGTAACTACAG                         GTGATGATTGGACCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTT
genomic: CTTCCCACCTCTAG-TGG-TCATG-AACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTT
EST: gi|193342400|gb|FK307276.1|FK307276
EST:     CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
genomic: CTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|207707995|gb|GD692506.1|GD692506
EST:     ACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCACTACTTTA
genomic: ACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|193628153|gb|FK572735.1|FK572735
EST:     ACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTCGTGCACACCATTACTTTA
genomic: ACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|208209596|gb|GE001865.1|GE001865
EST:     TGTCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
genomic: TG-CTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
EST: gi|193409184|gb|FK373272.1|FK373272
EST:     CTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAG                         GTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA
genomic: CTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctct ... gtggctgcagGTGATGATTGGATCTTTTGGACTTCTGATAGTTGTGCACACCATTACTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTATTAGCAGTAACCCTGCAGTTCCTCTTCCCACTGATGAAGTTGACTCTGCTTCTTCTATACACCCTCTTCCCACCTCTAGTGGTCATGAACTACAGgtctttctctctctctctctcatttttttaatacattcttttcttattctctcctccatttatttaataaaattcatgtttccatctaaataataaatga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc