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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactcgttcctgttattgttcattagttttgatactctattattggtttcattataaattttccccgtatatgtgacag

Basic information

species Glycine max
transcript GLYMA16G27430.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g22950.1 (Oryza sativa), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactcgttcctgttattgttcattagttttgata--ctctattattggtttcattataaattttccccgtatatgtgacag
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| | ||| || |||| || |||| ||| |||||    |  |           ||    ||   |||   |||  |  ||| |   | ||  || | | |        |||         
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacag---

upper sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g22950.2 (Oryza sativa), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactcgt-tcctgttattgttcattagttttgatactctattattggtttcattataaattttccccgtatatgtgacag
                                                                           |||   ||||  | ||||| | | | |     |   | || | ||  ||   | |  | | | ||||    |   |     ||  ||  |  || |    ||       ||||
--------------------------------------------------------------------------GTTTGCGATGA--GCTTGAGGACGTGATGGAAGAAGgtggtatactagtagattaccatggatgtgatttctttccagaacgttggtttgaccttgtagttgtgctccaaacag

upper sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactcgttcctgttattgttcattagttttgata--ctctat----tattggtttc--attataaattttccccgtatatgtgacag-------------------------------------------
| || |||||||| |||||||||||||| || |||||||||||    || ||||| || ||||| |||||| | ||| || |||| || |||| ||| |||||    |  |           ||    ||   |||   |||  |  |||    |  |  ||||  | ||  | || |   |  | | || | |                                            
TAGATTACCATGGATGTGATTTCTTTCCAGAACGTTGGTTTGACCTTGTAGTTGTGCTCCAAACAGATAACTCAATTCTGCATGATCGCTTGACTAGCAGgtaattcatgcagaactgcacaatcacccacctgttggaatagccattatgaaatgcttatttctgactaagagttctattcacagaggttatatgggtgccaagctcacaaacaacatagaatgtgaaattttccag

upper sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G60340.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactcgttcctgttattgttcattagttttgat---actctattattggtttcattataaattttccccgtatatgtgacag
||||||||||||||||||| ||||||||| |||| ||||||||| |||| || || |||| ||| || ||| || |||||||||||||||| |  |  |||| | ||   |    |||    | |||   ||   |||| |    || ||  |  | | | ||| |    | ||  |  |       |||
TGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTTTGATCGCGTTGTCGTGCTTCGAACCGAGAACTCCGTTTTGTATGACCGTTTAACGAATAGgt-cagatttccaaatccatcaaatgtagttttagtttgttttcgctttagcaaggttctgattgtgttctctcaac-caaccaaagcag

upper sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 2
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactc-gttcctgttattgt-tcattagttt--tgatactctatta----ttggtttcattataaattttccccgtatatgtgacag
||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| || |||||||| || ||| |  | |||||||||||  ||||||  |||||  || |  |  | ||  |  ||  | |  || ||||  | |||| ||   |    |   |||   |  |||  ||    || | |||| |||
TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt-tgtgtggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619568|gb|DB963734.1|DB963734
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|193535354|gb|FK489994.1|FK489994
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCT
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCT
EST: gi|298193921|gb|HO040569.1|HO040569
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|207731652|gb|GD707125.1|GD707125
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|31307006|gb|CD392209.1|CD392209
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298192839|gb|HO033273.1|HO033273
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|192332213|gb|FK023862.1|FK023862
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298183620|gb|HO028833.1|HO028833
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298173803|gb|HO017139.1|HO017139
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|254317987|gb|GR832155.1|GR832155
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298196424|gb|HO041167.1|HO041167
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTACGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|254331451|gb|GR845923.1|GR845923
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|192311583|gb|FK004838.1|FK004838
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|192316022|gb|FK007125.1|FK007125
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|254325388|gb|GR838269.1|GR838269
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|192317805|gb|FK009397.1|FK009397
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|208055228|gb|GD854519.1|GD854519
EST:     TTGTACTTCAAACTGATAACACCATTTTGTTATGACCGTTTGAGTAGGAG                         GGGGTACGAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCC
genomic: TTGTACTTCAAACTGATAACACCATTTTG-TATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTAC-AAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCC
EST: gi|298193545|gb|HO034151.1|HO034151
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAA-GCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|151401187|gb|EV271001.1|EV271001
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|254325389|gb|GR838270.1|GR838270
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|254323438|gb|GR840135.1|GR840135
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|298178466|gb|HO024201.1|HO024201
EST:     GTTGTACTTCAAACTGATAACACCATTCTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|193670198|gb|FK609452.1|FK609452
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCT
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCT
EST: gi|193548257|gb|FK505250.1|FK505250
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|192318020|gb|FK009472.1|FK009472
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|254317988|gb|GR832156.1|GR832156
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
EST: gi|254347363|gb|GR853612.1|GR853612
EST:     GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAG                         GGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA
genomic: GTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaaga ... tatgtgacagGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCA