1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGGGGATTTGTGAGCTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAACgtaagttatagttatgaaattgatatctctttcctttccatagattattttcttccgcctcttctctctcttttatttaatgcatacattccttgctaat...
species | Glycine max |
transcript | GLYMA16G27210.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAAC GTGTGTTATTCGEST: gi|27424557|gb|CA936077.1|CA936077
genomic: CTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAACgtaagttata ... aatttcaaagGTGTGTTATTCG
EST: AATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAAC GTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATCEST: gi|193346232|gb|FK309724.1|FK309724
genomic: AATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAACgtaagttata ... aatttcaaagGTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATC
EST: CTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAAC GTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATCEST: gi|151394106|gb|EV263977.1|EV263977
genomic: CTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAACgtaagttata ... aatttcaaagGTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATC
EST: CTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAAC GTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATC
genomic: CTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAACgtaagttata ... aatttcaaagGTGTGTTATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTCTATGGAGCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGGATTTGTGAGCTTCCATTTCATCCAATTAGTTCAGAAACAATTGGAGGAGTCGGTGGAACgtaagttatagttatgaaattgatatctctttcctttccatagattattttcttccgcctcttctctctcttttatttaatgcatacattccttgctaat
- - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc