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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaagaattaacactttcagcagtacttattttttgctttctgtagtaagacaaatctatttgcttaccttgttttttgtgatgtttagttactg...

Basic information

species Glycine max
transcript GLYMA16G27200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27200.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G13570.1 (Arabidopsis thaliana), 5'ss of exon 3
TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaagaattaacactttcagcagtacttattttttgctttctgtagtaagacaaatctatttgcttaccttgttttttgtgatgtttagttactg
||||||  | || || |||||||| || || ||||||||||| || |||  ||||||||| || ||||||||||| || || ||||| ||||||||||||||||||        | |   |   |   || |||  |||   | |  ||  |||  |  | |  |||  || | ||||  |||                 
TTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaaga--------accctgtggggtgatatttaggtttacttattagt--taatgcttaccctttttgtttcattgtcattttcag-------------

upper sequence: GLYMA16G27200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 3
TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaaga-----caagaattaacactttcagcag--tact-tattttttgctttctgtagtaagacaaatctatttgcttaccttgttttttgtgatgtttagttactg
|||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| | |||||||| | |||| |||| ||          ||| ||  ||      ||  || | ||||||   | ||   | |  ||| |||||  |||  |  | ||  || || | |     |       
TTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcatt--ttcttttaacaaccaa------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208215038|gb|GE014237.1|GE014237
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAAGAGAAGGGATGGAAA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... ctgtggacagTGCTTGCTA-GTGAAGGGATGGAAA
EST: gi|209716318|gb|BW657464.1|BW657464
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... ctgtggacagTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
EST: gi|151410336|gb|EV280151.1|EV280151
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... ctgtggacagTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
EST: gi|151409239|gb|EV279047.1|EV279047
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... ctgtggacagTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
EST: gi|151410478|gb|EV280293.1|EV280293
EST:     TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGG                         TGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA
genomic: TTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaag ... ctgtggacagTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGA