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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTGGCAACCATCCCAGTAACAGGCACTGGCATTAACCCTGCTAGGAGTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagctcttttctatattcaacaacttgctacttttatactattatcaaatttataatttgccatgtcatttgatgtaacaaaggataaaatagatggaacatttgtctgatatgtttcttatgtttgtttattcag

Basic information

species Glycine max
transcript GLYMA16G27130.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327570|gb|FK020631.1|FK020631
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|6724622|gb|AW309077.1|AW309077
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|193692163|gb|FK631076.1|FK631076
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|58022167|gb|CX708908.1|CX708908
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|17519398|gb|BM188440.1|BM188440
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|151410016|gb|EV279824.1|EV279824
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCTTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|208075052|gb|GD876333.1|GD876333
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAACCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|207779715|gb|GD752547.1|GD752547
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|7326946|gb|AW620744.1|AW620744
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|7327207|gb|AW620929.1|AW620929
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|6951245|gb|AW423374.1|AW423374
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|6455801|gb|AW186476.1|AW186476
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|197665981|gb|FD480395.1|FD480395
EST:     GTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTTGAGCAGCCATTGCAGCCTTCTAC
genomic: GTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|12496060|gb|BG046874.1|BG046874
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGTGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|14008857|gb|BG725461.1|BG725461
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCCTTTATTGGAGCAGGCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|58022426|gb|CX709167.1|CX709167
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|26268607|gb|CA819670.1|CA819670
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|7639044|gb|AW733375.1|AW733375
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|6846997|gb|AW349287.1|AW349287
EST:     GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCAT                         TGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
genomic: GTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagct ... gtttattcagTGGATCTTTTGGGTTGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACTTGGCAACCATCCCAGTAACAGGCACTGGCATTAACCCTGCTAGGAGTCTAGGAGCTGCTGTCATGTACAACCAACAGAAGGCCTGGGATGACCATgtgagtagctcttttctatattcaacaacttgctacttttatactattatcaaatttataatttgccatgtcatttgatgtaacaaaggataaaatagatggaacatttgtctgatatgtttcttatgtttgtttattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT