1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCCGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatacttaaaagtagtagctgaagttgcatttcttgctgattgagaatttataagctgttcctatttttctagggggtgggggagggagagaagggggaaggtgtatcctttagatatcttttaattttcactgacacactgcatgattattcttctgaag
species | Glycine max |
transcript | GLYMA16G27010.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCCGACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|8283787|gb|BE021346.1|BE021346
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|298169920|gb|HO018544.1|HO018544
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|209710160|gb|BW681072.1|BW681072
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|37997491|gb|CF809080.1|CF809080
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|58021292|gb|CX708033.1|CX708033
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|193642243|gb|FK587203.1|FK587203
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|192299481|gb|FG990790.1|FG990790
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|298187572|gb|HO034721.1|HO034721
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|298171093|gb|HO016125.1|HO016125
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAGTGGTGGTAAATGGATTATACGATEST: gi|151394261|gb|EV264132.1|EV264132
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGAT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|298180018|gb|HO025233.1|HO025233
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|7478427|gb|AW666261.1|AW666261
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|192295554|gb|FG988128.1|FG988128
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|14991741|gb|BI317414.1|BI317414
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|17022976|gb|BM094010.1|BM094010
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|192305689|gb|FG998039.1|FG998039
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|298193673|gb|HO040321.1|HO040321
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATGCGATTCAAAAAGGTTEST: gi|37995997|gb|CF807586.1|CF807586
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|19269428|gb|BM885684.1|BM885684
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|37994217|gb|CF805963.1|CF805963
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|58020447|gb|CX707189.1|CX707189
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|21677127|gb|BQ629478.1|BQ629478
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|58017961|gb|CX704703.1|CX704703
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|298166699|gb|HO010138.1|HO010138
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCEST: gi|19346443|gb|BM891323.1|BM891323
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTC
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|31464192|gb|CD406220.1|CD406220
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTGCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|13789026|gb|BG651617.1|BG651617
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|4397610|gb|AI496607.1|AI496607
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCCAAAAAEST: gi|57575959|gb|CX548930.1|CX548930
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTC-AAAAA
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|254329998|gb|GR839551.1|GR839551
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|192326201|gb|FK016288.1|FK016288
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCEST: gi|213611709|gb|DB960637.1|DB960637
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTC
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTEST: gi|151413065|gb|EV282873.1|EV282873
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
EST: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAG GACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
genomic: GTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatactt ... tcttctgaagGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCCGCTTCTTTACCTAGTCCAACAGATTTGCACCTTTTCAAGGAAGGAATCCGTCCTCTATGGGAGgtagatacttaaaagtagtagctgaagttgcatttcttgctgattgagaatttataagctgttcctatttttctagggggtgggggagggagagaagggggaaggtgtatcctttagatatcttttaattttcactgacacactgcatgattattcttctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA