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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATCATTGCTCTCTCTTTTGTTAGAAAAGGTTCAGACCTTGTGGAGGTCAGAAATCTACTTGGAAAGCATGCAAAAAGCATACTTCTCATGTCCAAGgtatccatccttattctcaagtaaatgtattctgttttactttaactcttcaaataatttacagaaatgtcattttactttcactttgattctattttcaaacatacgtataagctctccgtacaagtctatgaaaacaagaaacaaagttctggcattgattaatctcccaaattgtacttatttgttgtctttgttag

Basic information

species Glycine max
transcript GLYMA16G26830.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26830.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g16960.1 (Oryza sativa), 5'ss of exon 2
TGATATCATTGCTCTCTCTTTTGTTAGAAAAGGTTCAGACCTTGTGGAGGTCAGAAATCTACTTGGAAAGCATGCAAAAAGCATACTTCTCATGTCCAAGgtatccatccttattctcaagtaaatgtattctgttttactttaactcttcaaataatttacagaaatgtcattttactttcactttgattctattttcaaacatacgtataagctctccgtacaagtctatgaaaacaagaaacaaagttctggcattgattaatctcccaaattgtacttatttgttgtctttgttag
||| || |||||||| ||||||||| | ||||| ||||||||||| |||||||| ||  | ||||| |||||||||||    ||| | || ||||| |||||||  |   |   | |  ||||  || | |   | | |  |  ||| | |||| | ||||    | ||   ||| |                                                                                                                           
TGACATGATTGCTCTGTCTTTTGTTCGTAAAGGCTCAGACCTTGTAGAGGTCAGGAAGGTGCTTGGGAAGCATGCAAAGTCAATAATGCTGATGTCAAAGgtata-acattctcttttgagtat-tgcact---tctaagctgcactttgcaaagattttaatctattgaattttcag--------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G26830.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G26390.1 (Arabidopsis thaliana), 5'ss of exon 2
TGATATCATTGCTCTCTCTTTTGTTAGAAAAGGTTCAGACCTTGTGGAGGTCAGAAATCTACTTGGAAAGCATGCAAAAAGCATACTTCTCATGTCCAAGgtatccatccttattctcaagtaaatgtattctgttttactttaactcttcaaataatttacagaaatgtcattttactttcactttgattctattttcaaacatacgtataagctctccgtacaagtctatgaaaacaagaaacaaagttctggcattgattaatctcccaaattgtacttatttgttgtctttgttag
 || || |||||||| |||||||| ||||||||||| ||| | ||  | || || || ||||||||||| ||||| |||| ||||||||||||||| ||||||   ||    || |   | | ||  || | |   | || | | |  | |  | | | |   || |||| | |||   |    |  |                                                                                                                
CGACATGATTGCTCTGTCTTTTGTCAGAAAAGGTTCGGACTTGGTACAAGTTAGGAAGCTACTTGGAAAACATGCTAAAACCATACTTCTCATGTCAAAGgtacatatatacatacatcactcaaactaatataaatcacat-atccatactcagattcttatgatatgttacttttgatattgtcag----------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA16G26830.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g07600.t01 (Vitis vinifera), 5'ss of exon 2
TGATATCATTGCTCTCTCTTTTGTTAGAAAAGGTTCAGACCTTGTGGAGGTCAGAAATCTACTTGGAAAGCATGCAAAAAGCATACTTCTCATGTCCAAGgtatccatccttattctcaagtaaatgtattctgttttactttaactcttcaaataatttacagaaatgtcattttactttcactttgattctattttcaaacatacgtataagctctccgtacaagtctatgaaaacaagaaacaaagttctggcattgattaatctcccaaattgtacttatttgttgtctttgttag
|||||| |||||||| ||||||||| | ||||| |||||||||||||||||| |||  || || |   | ||||| ||    || ||||||||||| |||||||   |     ||     | ||| | | ||||      || || | ||   ||  ||   |   || | | |    ||    ||||                                                                                                                
TGATATGATTGCTCTGTCTTTTGTTCGCAAAGGGTCAGACCTTGTGGAGGTCCGAATGCTGCTGGCGGAACATGCTAAGTCTATCCTTCTCATGTCAAAGgtat--gttgaggtt-----gcaaa-gaactctg------ttgaagtatttgcatttttgggaaggatatgactaattttgtgatttggcag------------------------------------------------------------------------------------------------------------