Sequence
atgc intronic sequence ATGC exonic sequenceTTCATTCATGGGGGAGTGGATTGTTGGAGCTTTCATCAACCTCTTTGGTAGTATTGCAATAAACTTTGGGACCAATCTTCTCAAATTAGGGCATAATGAGgtatgccaaattcttttttctggttggaagttggaaccgtttgtgaagtacatttttatatatatgtttctctctctttttttgtaatgtggttcaaaaa...
Basic information
species | Glycine max |
transcript | GLYMA16G26550.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCATTCATGGGGGAGTGGATTGTTGGAGCTTTCATCAACCTCTTTGGTAGTATTGCAATAAACTTTGGGACCAATCTTCTCAAATTAGGGCATAATGAGgtatgccaaattcttttttctggttggaagttggaaccgtttgtgaagtacatttttatatatatgtttctctctctttttttgtaatgtggttcaaaaa
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ATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGTGTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGgtctgc---atttgcctcagccactactgtttggttacatttg------atctcgtcacgtgaaacgtattgtcttactttgtgtattatcag-------
upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 2
TTCATTCATGGGGGAGTGGATTGTTGGAGCTTTCATCAACCTCTTTGGTAGTATTGCAATAAACTTTGGGACCAATCTTCTCAAATTAGGGCATAATGAGgtatgccaaattcttttttctggttggaagttggaaccgtttgtgaagtacatttttatatatatgtttctctctctttttttgtaatgt--ggttcaaaaa
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TTGATCCATGGGGGAGTGGGTGGTTGGAGCTATCATCAACGTATTTGGCAGCATTGCCATAAACTTTGGGACTAATCTTCTAAAATTAGGTCATAATGAGgtatgtcattttctttgagctgtccaagaaatttgtttgcttccgctattatttattagctcagctttgcaacatttggtttgatgatgtatggctcatt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192305529|gb|FG998313.1|FG998313EST: GTATTGCAATAAACTTTGGGACCAATCTTCTCAAATTAGGGCATAATGAG AGAGAAAGACATTTACTTGGAAGTGATGGGGTAAATGGAAAGATGAATCTG
genomic: GTATTGCAATAAACTTTGGGACCAATCTTCTCAAATTAGGGCATAATGAGgtatgccaaa ... tttcttgcagAGAGAAAGACATTTACTTGGAAGTGATGGGGTAAATGGAAAGATGAATCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCATTCATGGGGGAGTGGATTGTTGGAGCTTTCATCAACCTCTTTGGTAGTATTGCAATAAACTTTGGGACCAATCTTCTCAAATTAGGGCATAATGAGgtatgccaaattcttttttctggttggaagttggaaccgtttgtgaagtacatttttatatatatgtttctctctctttttttgtaatgtggttcaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc